| Definition | Helicobacter pylori Shi470, complete genome. |
|---|---|
| Accession | NC_010698 |
| Length | 1,608,548 |
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The map label for this gene is feoB [H]
Identifier: 188527468
GI number: 188527468
Start: 654393
End: 656339
Strand: Direct
Name: feoB [H]
Synonym: HPSH_03430
Alternate gene names: 188527468
Gene position: 654393-656339 (Clockwise)
Preceding gene: 188527460
Following gene: 188527469
Centisome position: 40.68
GC content: 39.39
Gene sequence:
>1947_bases GTGGAGCATTCAAACCAAATGAAAGAAATCATTGTCGCTCTTGTGGGCCAACCTAATGTAGGGAAATCCTCTCTCATCAA CGCTTTGAGCAACGCCCATTTGAAAGTGGGGAATTTTGCCGGGGTTACCGTGGATAAGATGGAAGTGAGTTTGATCCACA AAGAGCGTCAAATCACTATCATTGATTTACCTGGCACTTACGCGCTCAATGACTTCACCACTGAAGAAAAGGTTACTAAA GATTTTTTAGAAAAAGGGCAATACGATCTCATTCTTAATGTGGTGGATTCCACCAATTTAGAGCGTAATTTAGCTTTAAG CGTGCAGTTATTAGACACGAATAAAAAAATGCTTCTTGCACTCAACATGTGGGATGAGGCTCAAAAAGAAGGCATTAAAA TCAATACAGAAAAGCTTTCTCAAGAATTAGGGGTTGTGTGCGTGCCTACAAGCGCAAGATCCAAAGAAGATCGCTTGAAT ACGGAGCTTTTATTAGATGAAATTGTCAGGCTTTATTCTCAAAACACTACAAACAATGAAAGCATAAAAGTCCCGTCTCA AAGTTTTAAGGAGTCTTTAAAATATAGCCAGAGCGCTCAAAGAATCGCCAAATTAGTGATCAGTGAAAACAAACAAAACG CGAGCTTTGAACACACTTATAAGATTGATAAGATTTTAATGCACAAGCGTTATGGGATTTTCATTTTTTTAGGGTTTATG TTTATCATTTTTTCCTTGAGCTTTTTAATAGGAGGCGGAGCGCAAAAAGCGCTTGAAGCAGGGTTTAAATTTTTGAGCGA TAGCGTTAAAGAAAATGTGGCTAATGAAGATTTAGCGTCTTTGGTGGGCGATGGCATTATTGGGGGAGTGGGAGCGACGG TTTCATTCTTGCCTTTAATTGTGGTGTTGTATTTTGGGATTTCTTTACTAGAAACGACAGGCTATATGAGTAGGGTAGCG TTTTTATTAGATGGGATCTTGCATAAATTTGGCTTGCATGGGAAGAGTTTTATCCCTTTAATCACCGGTTTTGGCTGCTC TGTGCCCGCTTACATGGCGACAAGAACCTTACAAAACTATAACGAACGATTGATCACGCTTTTTGTGATCGGGTTTATGA GCTGCTCGGCAAGACTCCCTATTTATGTGCTGTTTGTAGGCTCGTTTTTCCCTTCTTCAAGCGCGGGGTTTGTGCTGTTT TGTATTTATATTTTGGGGGCGGTTGTGGCGTTAGTGATGGCCAAATTACTCAAATTAAGCGTGTTTAAAGGACAGACTGA ATCCTTTATCATGGAAATGCCCAAATACCGTTTTCCCAGTTGGAGAATGGTCTATTTCAGTATCTATACCAAATCGCTTT CTTACCTTAAAAAGGCCGGGACTTATATTTTAGTGGGAGCGATTTTAATCTGGTTTATGTCTCAATACCCTAAAAGCGAT GCGGCTATGAAAACTTATAAACAAGAAAGCTTGTTAGTGGATAAAAACACCACCCTTTCAAGCGAAGCTAAAGAAGAAAA ATTAAAAGAATTAAAAACCAAATTGGATCAAAAGAATTTAAAAAATAGCATTGTAGGAAGAGGCGGGGCGTATTTGGAAA AAGTCTTTAGCCCTATGGATTTTGATTGGCGTTTGAGCGTCTCGCTTGTAACCGGATTTATGGCTAAAGAGGTGGTGGTT TCTACTTTGGGGGTGTTGTTTTCTTTAGGGGATCAAAATGAAAAATCTGACGCTTTTAGAGAGATTTTAAGAAAAGAAGT CAGCGTGCCTAGCGGGATCGCTTTTATCGTGTTTGTGATGTTTTATATCCCTTGTTTTGCAGCGACCATTACTTTTGGTA GGGAAGCTGGGGGGATCAAGTTTGTAGCGTATTTATTCATCTTCACAACCGTTGTAGCGTATGCGTTTTCCTTGATAGCT TTTTATGCAACTCAAATTTTGGTTTAA
Upstream 100 bases:
>100_bases TTCTTGTTTCGCTTTTATTATATAACAATTAGTCTTATAGCGCTATAGTGCTAACTTTTAATATCAAAACTATGTAACCA AAAATTAAAAAAACTTTAAT
Downstream 100 bases:
>100_bases AGGTTAGCCATGGTTTAAAAACCCTTTATTTGTTTAAAATTCACCCTATTAGAAATATTAAAAAATTTTTATTTTTCTCC CAATCTTTTCTATAAACATT
Product: iron(II) transport protein
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 648; Mature: 648
Protein sequence:
>648_residues MEHSNQMKEIIVALVGQPNVGKSSLINALSNAHLKVGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALNDFTTEEKVTK DFLEKGQYDLILNVVDSTNLERNLALSVQLLDTNKKMLLALNMWDEAQKEGIKINTEKLSQELGVVCVPTSARSKEDRLN TELLLDEIVRLYSQNTTNNESIKVPSQSFKESLKYSQSAQRIAKLVISENKQNASFEHTYKIDKILMHKRYGIFIFLGFM FIIFSLSFLIGGGAQKALEAGFKFLSDSVKENVANEDLASLVGDGIIGGVGATVSFLPLIVVLYFGISLLETTGYMSRVA FLLDGILHKFGLHGKSFIPLITGFGCSVPAYMATRTLQNYNERLITLFVIGFMSCSARLPIYVLFVGSFFPSSSAGFVLF CIYILGAVVALVMAKLLKLSVFKGQTESFIMEMPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQYPKSD AAMKTYKQESLLVDKNTTLSSEAKEEKLKELKTKLDQKNLKNSIVGRGGAYLEKVFSPMDFDWRLSVSLVTGFMAKEVVV STLGVLFSLGDQNEKSDAFREILRKEVSVPSGIAFIVFVMFYIPCFAATITFGREAGGIKFVAYLFIFTTVVAYAFSLIA FYATQILV
Sequences:
>Translated_648_residues MEHSNQMKEIIVALVGQPNVGKSSLINALSNAHLKVGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALNDFTTEEKVTK DFLEKGQYDLILNVVDSTNLERNLALSVQLLDTNKKMLLALNMWDEAQKEGIKINTEKLSQELGVVCVPTSARSKEDRLN TELLLDEIVRLYSQNTTNNESIKVPSQSFKESLKYSQSAQRIAKLVISENKQNASFEHTYKIDKILMHKRYGIFIFLGFM FIIFSLSFLIGGGAQKALEAGFKFLSDSVKENVANEDLASLVGDGIIGGVGATVSFLPLIVVLYFGISLLETTGYMSRVA FLLDGILHKFGLHGKSFIPLITGFGCSVPAYMATRTLQNYNERLITLFVIGFMSCSARLPIYVLFVGSFFPSSSAGFVLF CIYILGAVVALVMAKLLKLSVFKGQTESFIMEMPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQYPKSD AAMKTYKQESLLVDKNTTLSSEAKEEKLKELKTKLDQKNLKNSIVGRGGAYLEKVFSPMDFDWRLSVSLVTGFMAKEVVV STLGVLFSLGDQNEKSDAFREILRKEVSVPSGIAFIVFVMFYIPCFAATITFGREAGGIKFVAYLFIFTTVVAYAFSLIA FYATQILV >Mature_648_residues MEHSNQMKEIIVALVGQPNVGKSSLINALSNAHLKVGNFAGVTVDKMEVSLIHKERQITIIDLPGTYALNDFTTEEKVTK DFLEKGQYDLILNVVDSTNLERNLALSVQLLDTNKKMLLALNMWDEAQKEGIKINTEKLSQELGVVCVPTSARSKEDRLN TELLLDEIVRLYSQNTTNNESIKVPSQSFKESLKYSQSAQRIAKLVISENKQNASFEHTYKIDKILMHKRYGIFIFLGFM FIIFSLSFLIGGGAQKALEAGFKFLSDSVKENVANEDLASLVGDGIIGGVGATVSFLPLIVVLYFGISLLETTGYMSRVA FLLDGILHKFGLHGKSFIPLITGFGCSVPAYMATRTLQNYNERLITLFVIGFMSCSARLPIYVLFVGSFFPSSSAGFVLF CIYILGAVVALVMAKLLKLSVFKGQTESFIMEMPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQYPKSD AAMKTYKQESLLVDKNTTLSSEAKEEKLKELKTKLDQKNLKNSIVGRGGAYLEKVFSPMDFDWRLSVSLVTGFMAKEVVV STLGVLFSLGDQNEKSDAFREILRKEVSVPSGIAFIVFVMFYIPCFAATITFGREAGGIKFVAYLFIFTTVVAYAFSLIA FYATQILV
Specific function: ATP-driven Fe(2+) uptake system [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=749, Percent_Identity=28.0373831775701, Blast_Score=267, Evalue=2e-72,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011642 - InterPro: IPR002917 - InterPro: IPR005225 [H]
Pfam domain/function: PF07664 FeoB_C; PF07670 Gate; PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 72257; Mature: 72257
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEHSNQMKEIIVALVGQPNVGKSSLINALSNAHLKVGNFAGVTVDKMEVSLIHKERQITI CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHEECCCEEEE IDLPGTYALNDFTTEEKVTKDFLEKGQYDLILNVVDSTNLERNLALSVQLLDTNKKMLLA EECCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEE LNMWDEAQKEGIKINTEKLSQELGVVCVPTSARSKEDRLNTELLLDEIVRLYSQNTTNNE EECHHHHHHCCCEEEHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC SIKVPSQSFKESLKYSQSAQRIAKLVISENKQNASFEHTYKIDKILMHKRYGIFIFLGFM EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FIIFSLSFLIGGGAQKALEAGFKFLSDSVKENVANEDLASLVGDGIIGGVGATVSFLPLI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCHHHHHHHHHHH VVLYFGISLLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAYMATRTLQNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH NERLITLFVIGFMSCSARLPIYVLFVGSFFPSSSAGFVLFCIYILGAVVALVMAKLLKLS HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VFKGQTESFIMEMPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQYPKSD HHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH AAMKTYKQESLLVDKNTTLSSEAKEEKLKELKTKLDQKNLKNSIVGRGGAYLEKVFSPMD HHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC FDWRLSVSLVTGFMAKEVVVSTLGVLFSLGDQNEKSDAFREILRKEVSVPSGIAFIVFVM CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH FYIPCFAATITFGREAGGIKFVAYLFIFTTVVAYAFSLIAFYATQILV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MEHSNQMKEIIVALVGQPNVGKSSLINALSNAHLKVGNFAGVTVDKMEVSLIHKERQITI CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEECCCCCCCHHHHHHHHEECCCEEEE IDLPGTYALNDFTTEEKVTKDFLEKGQYDLILNVVDSTNLERNLALSVQLLDTNKKMLLA EECCCCEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEEEEEEECCCEEEEE LNMWDEAQKEGIKINTEKLSQELGVVCVPTSARSKEDRLNTELLLDEIVRLYSQNTTNNE EECHHHHHHCCCEEEHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC SIKVPSQSFKESLKYSQSAQRIAKLVISENKQNASFEHTYKIDKILMHKRYGIFIFLGFM EEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FIIFSLSFLIGGGAQKALEAGFKFLSDSVKENVANEDLASLVGDGIIGGVGATVSFLPLI HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHCCHHHHHHHHHHH VVLYFGISLLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAYMATRTLQNY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHH NERLITLFVIGFMSCSARLPIYVLFVGSFFPSSSAGFVLFCIYILGAVVALVMAKLLKLS HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH VFKGQTESFIMEMPKYRFPSWRMVYFSIYTKSLSYLKKAGTYILVGAILIWFMSQYPKSD HHCCCHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH AAMKTYKQESLLVDKNTTLSSEAKEEKLKELKTKLDQKNLKNSIVGRGGAYLEKVFSPMD HHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCC FDWRLSVSLVTGFMAKEVVVSTLGVLFSLGDQNEKSDAFREILRKEVSVPSGIAFIVFVM CCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHH FYIPCFAATITFGREAGGIKFVAYLFIFTTVVAYAFSLIAFYATQILV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9923682 [H]