Definition Helicobacter pylori Shi470, complete genome.
Accession NC_010698
Length 1,608,548

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The map label for this gene is ppk [H]

Identifier: 188527245

GI number: 188527245

Start: 429911

End: 431938

Strand: Reverse

Name: ppk [H]

Synonym: HPSH_02260

Alternate gene names: 188527245

Gene position: 431938-429911 (Counterclockwise)

Preceding gene: 188527246

Following gene: 188527244

Centisome position: 26.85

GC content: 39.69

Gene sequence:

>2028_bases
TTGAATCGTTTCTTTAACCGAGAGCTTTCATGGTTAGCTTTTAACACAAGAGTTTTAAACGAAGCCAAAGATGAGAGCTT
GCCTTTATTAGAGCGCTTGAAATTTTTAGCCATTTATGACACGAATTTAGACGAATTTTACATGATAAGAGTGGCAGGGC
TTAAACAACTCTATGAGCATAAAATCGCCTCTAAAGGCATTGATGGCGCAAGCCCTGAAGAACAATTAGAAAAAATCAAG
CATTATTTAGCGCATGAAATTGAAGAAAGGGAGTTAGAATTCCAAAAAATCCAAGCCCTACTCTTTAAAAAAGGGCTTTG
TATCACCCCCTATAGTGAATTGAATTTGGAGCAAAAAGCTAAGGCTAAAACCTATTTTAAAGAGCAACTTTATGCGTTAG
CTTTGCCTTTTAAGTTGGATTCTTCGCACACTTTCCCGCCTTTAGCGAATTTGACTTTCGCGCTTTTTGCCCGCATTAAA
GACAAAGAAACCCAAACCACCTCCTATGCGCTCATCAAACTCCCCTCTTTTATCTTCCGTTTTGTGGAGCTAGAAAAAGG
CTTGTTTGTGCTGGCTGAAGAAATCGTAGAAGCGCATTTAGAAGAATTGTTTTTAGAGCATGAGATTTTAGATTGCATGG
CGTTTAGGGTAACTTGCGATGCGGATATTGCCATCGCTGAAGATGAAGCGCATGATTATGCGGATTTGATGAGTAAGAGT
TTAAGGAAACGCAATCAAGGCGAAATCGTGCGCTTGCAAACCCAAAAAGGGAGTCAAGAGCTTTTTAAAACCCTTTTAGC
GTCTTTAAGGAGTTTTCAAACCCACTCTTACAAAAAGCACAAACTCACCGGCATGCATGCCTATAAAAGCGCGATCATGC
TCAATTTAGGGGATTTGTGGGAATTGGTCAATCATAGCGATTTTAAAGCGCTTAAATCGCCCAATTTCACGCCCAAAATC
CACCCTCATTTCAATGAAAACGATCTCTTTAAATCCATAGAAAAGCAAGATCTGTTGCTGTTCCACCCGTATGAAAGTTT
TGAGCCTGTGGTTGATCTAATAGAGCAAGCCGCTAGCGATCCCACCACCCTTTCTATCAAAATGACGCTTTATCGTGTGG
GCAAGCATTCCCCCATTGTCAAAGCCTTAATTGAAGCGGCGAGCAAGATTCAAGTGAGCGTTTTAGTGGAATTAAAAGCG
CGTTTTGATGAAGAGAGCAATCTGCATTGGGCAAAAGCTTTAGAAAGGGCGGGCGCATTAGTCGTTTATGGCGTTTTCAA
ACTCAAAGTGCATGCTAAAATGCTGGTGATCACTAAAAAAACAGACAACCAATTACGCCATTTCACCCATTTAAGCACGG
GCAATTACAACCCTTTGAGCGCTAAAATCTATACCGATGTGAGTTTTTTTAGCGCTAAAAATGAAATCGCTAACGACATT
ATCAAGCTTTTCCATTCCTTGCTCACTAGCAGCGCGACTAACAGCGCATTAGAAACGCTTTTTATGGCGCCCAAACAGAT
CAAGCCTAAAATCATTGAACTCATTCAAAATGAAATGAATCACCAACAGGAAGGCTATATCATTTTAAAAGCCAACGCCC
TAGTGGATAGCGAAATCATTGAATGGCTCTATCAAGCCTCTCAAAAAGGGGTTAAAATTGATCTCATTATTAGAGGGATT
TGCTGTTTAAAGCCTCAAGTCAAGGGATTGAGCGAAAACATCAGGGTGTATTCTATTGTGGGGAAATATTTAGAACATGC
GCGCATTTATTATTTTAAACATGAGAATATCTATTTTTCTAGCGCGGATTTAATGCCCAGAAATTTAGAAAGGCGCGTGG
AATTGCTTGTCCCGGCCACAAACCCAAAGATCGCTAATAAATTGTTGCATATTTTAGAAATCCAATTGAAAGACACCCTA
AAACGCTATGAGTTAAATTCTAAAGGCCGTTACATTAAAGTTTCAAACCCTAACGATCCTTTAAATTCACAAGATTACTT
TGAAAAGCAAGCCCTTAAAACCTTTTAA

Upstream 100 bases:

>100_bases
GTGGGTTTGAATCCCGCTACTCCGACCATAACTTTTTAAAAAAGCTTCAATTATTATCATTTCATTATATAATCACACCA
TATGATTTAAAGGATTTCTA

Downstream 100 bases:

>100_bases
GGGTTATCGTTCAAATCATAAAAGATAAGGATTTAAATGCTTTATTCGTTATTAAAAAAATATCTTTTTAGCCTAGACGC
TGAAGACGCGCATGAAAAAG

Product: polyphosphate kinase

Products: NA

Alternate protein names: ATP-polyphosphate phosphotransferase; Polyphosphoric acid kinase [H]

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK
HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK
DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS
LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI
HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA
RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI
IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI
CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL
KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF

Sequences:

>Translated_675_residues
MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK
HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK
DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS
LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI
HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA
RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI
IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI
CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL
KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF
>Mature_675_residues
MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEHKIASKGIDGASPEEQLEKIK
HYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKAKAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIK
DKETQTTSYALIKLPSFIFRFVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS
LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLWELVNHSDFKALKSPNFTPKI
HPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASDPTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKA
RFDEESNLHWAKALERAGALVVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI
IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEIIEWLYQASQKGVKIDLIIRGI
CCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFSSADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTL
KRYELNSKGRYIKVSNPNDPLNSQDYFEKQALKTF

Specific function: Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP) [H]

COG id: COG0855

COG function: function code P; Polyphosphate kinase

Gene ontology:

Cell location: Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polyphosphate kinase family [H]

Homologues:

Organism=Escherichia coli, GI1788847, Length=687, Percent_Identity=32.3144104803493, Blast_Score=349, Evalue=4e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003414 [H]

Pfam domain/function: PF02503 PP_kinase [H]

EC number: =2.7.4.1 [H]

Molecular weight: Translated: 77853; Mature: 77853

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEH
CCCCCCCCCCEEEEHHHHHHHCCCCCCCHHHHCEEEEEEECCCCCEEEHHHHHHHHHHHH
KIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH
KAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIKDKETQTTSYALIKLPSFIFR
HHHHHHHHHHHHHEECEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHH
LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLW
HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHH
ELVNHSDFKALKSPNFTPKIHPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASD
HHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC
PTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALERAGAL
CCEEEEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEHHHHCCCCCCCHHHHHHHHCCCE
VVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI
EEEEEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH
IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEII
HHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
EWLYQASQKGVKIDLIIRGICCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFS
HHHHHHHCCCCEEEEEEECHHHCCCHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEEE
SADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTLKRYELNSKGRYIKVSNPNDP
CCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
LNSQDYFEKQALKTF
CCCHHHHHHHHHHCC
>Mature Secondary Structure
MNRFFNRELSWLAFNTRVLNEAKDESLPLLERLKFLAIYDTNLDEFYMIRVAGLKQLYEH
CCCCCCCCCCEEEEHHHHHHHCCCCCCCHHHHCEEEEEEECCCCCEEEHHHHHHHHHHHH
KIASKGIDGASPEEQLEKIKHYLAHEIEERELEFQKIQALLFKKGLCITPYSELNLEQKA
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCHHHCCCHHHH
KAKTYFKEQLYALALPFKLDSSHTFPPLANLTFALFARIKDKETQTTSYALIKLPSFIFR
HHHHHHHHHHHHHEECEEECCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
FVELEKGLFVLAEEIVEAHLEELFLEHEILDCMAFRVTCDADIAIAEDEAHDYADLMSKS
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEECCCHHHHHHHHHHH
LRKRNQGEIVRLQTQKGSQELFKTLLASLRSFQTHSYKKHKLTGMHAYKSAIMLNLGDLW
HHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHCCHHHHH
ELVNHSDFKALKSPNFTPKIHPHFNENDLFKSIEKQDLLLFHPYESFEPVVDLIEQAASD
HHHCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCC
PTTLSIKMTLYRVGKHSPIVKALIEAASKIQVSVLVELKARFDEESNLHWAKALERAGAL
CCEEEEEEEEEECCCCCHHHHHHHHHHHHEEEEEEEEHHHHCCCCCCCHHHHHHHHCCCE
VVYGVFKLKVHAKMLVITKKTDNQLRHFTHLSTGNYNPLSAKIYTDVSFFSAKNEIANDI
EEEEEEEEEEEEEEEEEEECCCHHHHHHHCCCCCCCCCCEEEEEECHHHHHHHHHHHHHH
IKLFHSLLTSSATNSALETLFMAPKQIKPKIIELIQNEMNHQQEGYIILKANALVDSEII
HHHHHHHHHCCCCHHHHHHHHHCCHHCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHH
EWLYQASQKGVKIDLIIRGICCLKPQVKGLSENIRVYSIVGKYLEHARIYYFKHENIYFS
HHHHHHHCCCCEEEEEEECHHHCCCHHCCCCCCCCHHHHHHHHHHCCEEEEEEECCEEEE
SADLMPRNLERRVELLVPATNPKIANKLLHILEIQLKDTLKRYELNSKGRYIKVSNPNDP
CCCCCCCCHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCC
LNSQDYFEKQALKTF
CCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9923682 [H]