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The map label for this gene is ywbI [H]

Identifier: 187928133

GI number: 187928133

Start: 1106081

End: 1106995

Strand: Direct

Name: ywbI [H]

Synonym: Rpic_1040

Alternate gene names: 187928133

Gene position: 1106081-1106995 (Clockwise)

Preceding gene: 187928131

Following gene: 187928134

Centisome position: 28.05

GC content: 67.87

Gene sequence:

>915_bases
ATGAATCTCGCCCGCTTCGATCTCGTCACCCTCGGCCTGTTTGTGGCGGTGGCCCGGCTGGGCAGCATCTCGGCCGGGGC
GCGCCAATCGCACCTGGCTGTGGCGGCGGCCAGCAAGCGGATTTCCGATCTGGAAGCGGCCGTGGGCGCGCCGTTGCTGT
ATCGCCATGCCGCGGGTGTAGAACTGACCGAAGCGGGGCAGGCGTGCTTCCGCCACGCTGTCGGCATCCTGCAGGACGTC
GAGCGTATGGCCGGCGCGCTGTCGGACTTTGCCGCCGGCACGCGCGGGCTGGTACGCGTGTGGGCCAATACCTCGTCGAT
TACGCAATTCCTGGCTGACGACCTGGCCGCCTTCATGCTGGCCAATCCGGCCATCCGCATCGCGCTGGAAGAGCAGGACA
GCGGCGATATCGTTGCCGCGCTGCGCGAGAACCGCGCGGACCTCGGCATCTTTGCGGCCGGTACACCGTGCGAGGGGCTG
CAATCGTTCGACTATCGCGAGGACGATCTCGCCTTGGTCACGCCGCGCGGGCATCCATTGGCCGGGCGCAAGCAGGTTCA
CTTCGCCGACGCCGTGGATTTCGACTTCGTCAGCCTGCCGCCGGGCACGTCGCTGGCCGCGCAACTGGTCGACGAAAGCT
TGCGTCTGGGCAAGCCGTTGCGCCTGCGCATCCAGGTGCGCAGCTTTGAAGCCGTTTGCCGGATGGTGGCCTCCGGCCTG
GGCGTGGGCGTGTTGCCGCGCATCGCCGCACAAAGCCATGTATCGAGCCTGCCGGGCGCCGGTCTGGCGCTCGTGGCGCT
CCAAGACGAATGGGCGCATCGCCGCCTGCTGGTGGGCGTGCGTGACCCCGATGCGCTGACCAGCTCAGCACGCCTGTTGA
TGACGCATCTGCTTGGCAACCCCGCCGCACTCTGA

Upstream 100 bases:

>100_bases
CCCGGCCATGCTAAGCGCTATGTCATGACTTGCCGATGAAAACTGTAACGATTCGCATTGACCTGTCGCGTTTCTCCAAC
TCCGCCGGATTATCCGCATC

Downstream 100 bases:

>100_bases
ATTCAACGCTCTCTATACGACCATGCCGACACAGGTTTTGCAGGACATCCGCGTGCTCGAACTCGGGCAACTGATTGCCG
GGCCGTTTGCCGCCAAGACG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGVELTEAGQACFRHAVGILQDV
ERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFMLANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGL
QSFDYREDDLALVTPRGHPLAGRKQVHFADAVDFDFVSLPPGTSLAAQLVDESLRLGKPLRLRIQVRSFEAVCRMVASGL
GVGVLPRIAAQSHVSSLPGAGLALVALQDEWAHRRLLVGVRDPDALTSSARLLMTHLLGNPAAL

Sequences:

>Translated_304_residues
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGVELTEAGQACFRHAVGILQDV
ERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFMLANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGL
QSFDYREDDLALVTPRGHPLAGRKQVHFADAVDFDFVSLPPGTSLAAQLVDESLRLGKPLRLRIQVRSFEAVCRMVASGL
GVGVLPRIAAQSHVSSLPGAGLALVALQDEWAHRRLLVGVRDPDALTSSARLLMTHLLGNPAAL
>Mature_304_residues
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGVELTEAGQACFRHAVGILQDV
ERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFMLANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGL
QSFDYREDDLALVTPRGHPLAGRKQVHFADAVDFDFVSLPPGTSLAAQLVDESLRLGKPLRLRIQVRSFEAVCRMVASGL
GVGVLPRIAAQSHVSSLPGAGLALVALQDEWAHRRLLVGVRDPDALTSSARLLMTHLLGNPAAL

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=243, Percent_Identity=27.9835390946502, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI145693105, Length=288, Percent_Identity=24.3055555555556, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788297, Length=270, Percent_Identity=28.1481481481481, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1787601, Length=261, Percent_Identity=23.3716475095785, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=26.2295081967213, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788887, Length=199, Percent_Identity=27.6381909547739, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786401, Length=145, Percent_Identity=31.7241379310345, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI2367136, Length=249, Percent_Identity=24.0963855421687, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32109; Mature: 32109

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
ELTEAGQACFRHAVGILQDVERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHHHHHH
ANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGLQSFDYREDDLALVTPRGHPL
CCCEEEEEEECCCCCCEEHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCEEEECCCCCCC
AGRKQVHFADAVDFDFVSLPPGTSLAAQLVDESLRLGKPLRLRIQVRSFEAVCRMVASGL
CCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHCC
GVGVLPRIAAQSHVSSLPGAGLALVALQDEWAHRRLLVGVRDPDALTSSARLLMTHLLGN
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
PAAL
CCCC
>Mature Secondary Structure
MNLARFDLVTLGLFVAVARLGSISAGARQSHLAVAAASKRISDLEAAVGAPLLYRHAAGV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCC
ELTEAGQACFRHAVGILQDVERMAGALSDFAAGTRGLVRVWANTSSITQFLADDLAAFML
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHEEEECCHHHHHHHHHHHHHHHHH
ANPAIRIALEEQDSGDIVAALRENRADLGIFAAGTPCEGLQSFDYREDDLALVTPRGHPL
CCCEEEEEEECCCCCCEEHHHHHCCCCEEEEECCCCCCHHHCCCCCCCCEEEECCCCCCC
AGRKQVHFADAVDFDFVSLPPGTSLAAQLVDESLRLGKPLRLRIQVRSFEAVCRMVASGL
CCCCEEEEECCCCCCEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHCC
GVGVLPRIAAQSHVSSLPGAGLALVALQDEWAHRRLLVGVRDPDALTSSARLLMTHLLGN
CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCC
PAAL
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]