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The map label for this gene is yfdE [H]

Identifier: 187928134

GI number: 187928134

Start: 1107018

End: 1108226

Strand: Direct

Name: yfdE [H]

Synonym: Rpic_1041

Alternate gene names: 187928134

Gene position: 1107018-1108226 (Clockwise)

Preceding gene: 187928133

Following gene: 187928135

Centisome position: 28.08

GC content: 66.42

Gene sequence:

>1209_bases
ATGCCGACACAGGTTTTGCAGGACATCCGCGTGCTCGAACTCGGGCAACTGATTGCCGGGCCGTTTGCCGCCAAGACGCT
CGCCGACTTTGGCGCACAGGTCATCAAGATCGAGCCGCCGGGGCAGGGCGATCCGCTGCGCAAATGGCGGATGCTGCATG
AGGGCACGTCAGTCTGGTGGGAAGCGCAGTCGCGCAACAAGCAGTCGGTCTGTGTCGACCTGCGTGTCCCGGAAGGACAG
GAAGTCGTTCGCAAGCTGGCTGCCGAAGCCGATGTGCTGATCGAGAATTTCCGCCCCGGCACGATGGAAAAGTGGGGGCT
GTCGTACGAGGCGCTGTCGACCGACAACCCGAAGCTCATCATGCTGCGCGTGTCGGGCTATGGCCAGACGGGCCCCAAAC
GGGATGAACCGGGCTTTGCGGCCATTGCCGAAGCCATGGCCGGCCTGCGCTATTTGACCGGTGAGCCGGGGCGCCCACCT
GCCCGTGCAGGGCTGTCGCTTGGCGACACGATCGCCGGCCTGCATGGCGCGCTGGGCGTGTTGCTGGCCTTGTACGAACG
CGATGCGCGCGGCGGCAAGGGGCAGGTGATCGACGTGGCGCTCTATGAATCCGTGTTCAACCTGACGGAGAGCCTGTTGC
CCGAGTATTCGGTGTTCGGTGCGATCCGCCAGCCGGCGGGTGGGGCGCTGCCGGGCATCGCGCCGTCGAACGCCTACCGC
TGCGCCGGCGGTGAATACGTCCTGATTGCCGCCAACGGCGACAACATCTTCCGTCGCCTGATGCAACACATGGGCCGGCA
TGATCTGGCCGACGATCCCGGCCTGGCCCGCAACGACGGCCGCGCGGCGCGTGCCGAGGAAATCGACGCTGCCGTCAATG
CTTGGACAAGCACGCTCCCCATCGCCGATGTTCTGGCTGCGCTGCATGCGGCCGAAGTGCCCTGCGGTCCGATCTACACC
GTCGCAGACATTGCCGCCGACCCGCACTATCGCGCACGCGGCGTGATCGAAACGGTGCGCGCGCAGTCGGGCATCGAGGT
GGAGATGCCGGGCGTGGTGCCCAAGCTTTCCGCCACGCCGGGCGCCGTGCAGGCGAGCGCGCCGCGCCTGGGCCAGCACA
CGCGTGACGTACTGCGCGGCCACGGCCTGACCGATGGGCAGATCGATGCGCTGGTTTCGCAAGGCATCATTGCCGAAGTC
AAAAGCTAA

Upstream 100 bases:

>100_bases
GTGCGTGACCCCGATGCGCTGACCAGCTCAGCACGCCTGTTGATGACGCATCTGCTTGGCAACCCCGCCGCACTCTGAAT
TCAACGCTCTCTATACGACC

Downstream 100 bases:

>100_bases
ACAGCTAGGACGATCCCGCATGTTGTGTTGCAAATCGTTGCGGTAATATCGCCGCCGAGGCAGTGAACGCACAGAACAGG
AGACAGGCATGGGGACACAA

Product: Formyl-CoA transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVPEGQ
EVVRKLAAEADVLIENFRPGTMEKWGLSYEALSTDNPKLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPP
ARAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYSVFGAIRQPAGGALPGIAPSNAYR
CAGGEYVLIAANGDNIFRRLMQHMGRHDLADDPGLARNDGRAARAEEIDAAVNAWTSTLPIADVLAALHAAEVPCGPIYT
VADIAADPHYRARGVIETVRAQSGIEVEMPGVVPKLSATPGAVQASAPRLGQHTRDVLRGHGLTDGQIDALVSQGIIAEV
KS

Sequences:

>Translated_402_residues
MPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVPEGQ
EVVRKLAAEADVLIENFRPGTMEKWGLSYEALSTDNPKLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPP
ARAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYSVFGAIRQPAGGALPGIAPSNAYR
CAGGEYVLIAANGDNIFRRLMQHMGRHDLADDPGLARNDGRAARAEEIDAAVNAWTSTLPIADVLAALHAAEVPCGPIYT
VADIAADPHYRARGVIETVRAQSGIEVEMPGVVPKLSATPGAVQASAPRLGQHTRDVLRGHGLTDGQIDALVSQGIIAEV
KS
>Mature_401_residues
PTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWWEAQSRNKQSVCVDLRVPEGQE
VVRKLAAEADVLIENFRPGTMEKWGLSYEALSTDNPKLIMLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPA
RAGLSLGDTIAGLHGALGVLLALYERDARGGKGQVIDVALYESVFNLTESLLPEYSVFGAIRQPAGGALPGIAPSNAYRC
AGGEYVLIAANGDNIFRRLMQHMGRHDLADDPGLARNDGRAARAEEIDAAVNAWTSTLPIADVLAALHAAEVPCGPIYTV
ADIAADPHYRARGVIETVRAQSGIEVEMPGVVPKLSATPGAVQASAPRLGQHTRDVLRGHGLTDGQIDALVSQGIIAEVK
S

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=399, Percent_Identity=29.8245614035088, Blast_Score=190, Evalue=2e-48,
Organism=Homo sapiens, GI300863124, Length=423, Percent_Identity=29.5508274231678, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=27.7078085642317, Blast_Score=152, Evalue=4e-37,
Organism=Homo sapiens, GI266456254, Length=402, Percent_Identity=30.8457711442786, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI42794625, Length=401, Percent_Identity=30.9226932668329, Blast_Score=144, Evalue=2e-34,
Organism=Homo sapiens, GI13376042, Length=425, Percent_Identity=26.3529411764706, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI266458393, Length=299, Percent_Identity=34.4481605351171, Blast_Score=132, Evalue=7e-31,
Organism=Homo sapiens, GI266458397, Length=261, Percent_Identity=36.7816091954023, Blast_Score=126, Evalue=4e-29,
Organism=Homo sapiens, GI266458395, Length=126, Percent_Identity=42.0634920634921, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI42822893, Length=126, Percent_Identity=42.0634920634921, Blast_Score=96, Evalue=6e-20,
Organism=Escherichia coli, GI87082093, Length=373, Percent_Identity=31.9034852546917, Blast_Score=197, Evalue=8e-52,
Organism=Escherichia coli, GI1788717, Length=417, Percent_Identity=30.2158273381295, Blast_Score=163, Evalue=2e-41,
Organism=Escherichia coli, GI1786222, Length=399, Percent_Identity=27.3182957393484, Blast_Score=140, Evalue=2e-34,
Organism=Caenorhabditis elegans, GI115535051, Length=276, Percent_Identity=31.5217391304348, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=282, Percent_Identity=30.1418439716312, Blast_Score=102, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24648431, Length=376, Percent_Identity=32.7127659574468, Blast_Score=209, Evalue=2e-54,
Organism=Drosophila melanogaster, GI24585488, Length=364, Percent_Identity=30.4945054945055, Blast_Score=119, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42777; Mature: 42646

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWW
CCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
EAQSRNKQSVCVDLRVPEGQEVVRKLAAEADVLIENFRPGTMEKWGLSYEALSTDNPKLI
ECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCEEE
MLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPARAGLSLGDTIAGLHGALGV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHH
LLALYERDARGGKGQVIDVALYESVFNLTESLLPEYSVFGAIRQPAGGALPGIAPSNAYR
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEE
CAGGEYVLIAANGDNIFRRLMQHMGRHDLADDPGLARNDGRAARAEEIDAAVNAWTSTLP
ECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
IADVLAALHAAEVPCGPIYTVADIAADPHYRARGVIETVRAQSGIEVEMPGVVPKLSATP
HHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
GAVQASAPRLGQHTRDVLRGHGLTDGQIDALVSQGIIAEVKS
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHCCC
>Mature Secondary Structure 
PTQVLQDIRVLELGQLIAGPFAAKTLADFGAQVIKIEPPGQGDPLRKWRMLHEGTSVWW
CHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHCCCCEEE
EAQSRNKQSVCVDLRVPEGQEVVRKLAAEADVLIENFRPGTMEKWGLSYEALSTDNPKLI
ECCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEECCCCCEEE
MLRVSGYGQTGPKRDEPGFAAIAEAMAGLRYLTGEPGRPPARAGLSLGDTIAGLHGALGV
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHH
LLALYERDARGGKGQVIDVALYESVFNLTESLLPEYSVFGAIRQPAGGALPGIAPSNAYR
HHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEE
CAGGEYVLIAANGDNIFRRLMQHMGRHDLADDPGLARNDGRAARAEEIDAAVNAWTSTLP
ECCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
IADVLAALHAAEVPCGPIYTVADIAADPHYRARGVIETVRAQSGIEVEMPGVVPKLSATP
HHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCC
GAVQASAPRLGQHTRDVLRGHGLTDGQIDALVSQGIIAEVKS
CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]