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The map label for this gene is ylbK [H]

Identifier: 187928114

GI number: 187928114

Start: 1080322

End: 1081278

Strand: Reverse

Name: ylbK [H]

Synonym: Rpic_1021

Alternate gene names: 187928114

Gene position: 1081278-1080322 (Counterclockwise)

Preceding gene: 187928116

Following gene: 187928106

Centisome position: 27.43

GC content: 65.2

Gene sequence:

>957_bases
ATGCAACGCCGCCTTTTCCTGGGTGCCGCCGGCGCCTCCGTGCTCTCCGCCTGCACCGTGACGGGTTTCTCGTCCGGCAA
AACCGAAACGCCCGTCACCCCCGCCACGGCCGTGCTGCCGCCCACGACTCAACCAGCCACACAGCCCGTGCGGATCGGGT
TGGCACTGGGCGGAGGTGCCGCGCGCGGTTTTGCGCACATCGGCGTCATCAAGATGCTGGAAGCCCAAGGCATTCAGATC
GACTTCATCACCGGCACGAGCGCGGGTAGCGTGGTAGCGGCGATCTACGCGTCGGGCATGTCGGGGCTGGAGATGAACCG
CATGGCGCTCAAGATGGACGAGGCCATGATCGCCGATTGGGCGCTGCCCTTCGGCACGCGCTTCGGCGGCTGGCTCAAGG
GCGAGGCGCTGGAGAAATACATCAACCGGCTGGTCAAGCAGAAGACGATCGAGCAGATGCGCATTCCACTCGGCATCGTT
GCGACGGACCTGGCGAGCGGCAAGCCGATCCTGTTCCGGCGCGGCAATACCGGTCAGGCGGTGCGTGCGTCCTGCAGTAT
CCCGGGCGTGTTCCAGCCGGTAACGATCAGCGGTCGCCAATATGTGGACGGCGGCTTGGTGGCGCCAGTGCCGGTTACCT
ACGTCAAGCAGATGGGCGCGACGTTCGTGATTGCAGTGAACATCTCGGCAGACCCTGCCAACCAGGCTGTGTCGGGACAG
GCGAGCATGCTGCTGCAGACGACAGCCATCATGGGTCAGAGCATCAGCAAGACCGAGCTGGCCCAGGCCGATGTGGTCAT
CACACCGTCGCTGCCGTTTGTGAAGGGCAGCGACTTTACCGCGCGCAACGAGGCGATTCTCGCGGGCGAGCAGGCTGCTC
AGGCCGCCATGCCGCTGCTGCGGGAAAAGCTGCATCTGACGCAGACCATCGTGGGCACCCCGTTGCCGCCGCACTGA

Upstream 100 bases:

>100_bases
CGACCCTGTCGCTGAACTTTGGCACAATGGCGGCCGGCCGCAGTGCGCTCGGTCACGACTGAACACAACTGCGCGGCATA
CCAACCGCCCCAACTCACTC

Downstream 100 bases:

>100_bases
CACCCCTGTCAGCGGTGTCAAGTCCTGCCATAGGTTGACACTGTGCTCAGTCTCCGAGCGCCCGATGCACCGCATCGGGC
GTTTTGTATTTCAAGGCCAG

Product: Patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MQRRLFLGAAGASVLSACTVTGFSSGKTETPVTPATAVLPPTTQPATQPVRIGLALGGGAARGFAHIGVIKMLEAQGIQI
DFITGTSAGSVVAAIYASGMSGLEMNRMALKMDEAMIADWALPFGTRFGGWLKGEALEKYINRLVKQKTIEQMRIPLGIV
ATDLASGKPILFRRGNTGQAVRASCSIPGVFQPVTISGRQYVDGGLVAPVPVTYVKQMGATFVIAVNISADPANQAVSGQ
ASMLLQTTAIMGQSISKTELAQADVVITPSLPFVKGSDFTARNEAILAGEQAAQAAMPLLREKLHLTQTIVGTPLPPH

Sequences:

>Translated_318_residues
MQRRLFLGAAGASVLSACTVTGFSSGKTETPVTPATAVLPPTTQPATQPVRIGLALGGGAARGFAHIGVIKMLEAQGIQI
DFITGTSAGSVVAAIYASGMSGLEMNRMALKMDEAMIADWALPFGTRFGGWLKGEALEKYINRLVKQKTIEQMRIPLGIV
ATDLASGKPILFRRGNTGQAVRASCSIPGVFQPVTISGRQYVDGGLVAPVPVTYVKQMGATFVIAVNISADPANQAVSGQ
ASMLLQTTAIMGQSISKTELAQADVVITPSLPFVKGSDFTARNEAILAGEQAAQAAMPLLREKLHLTQTIVGTPLPPH
>Mature_318_residues
MQRRLFLGAAGASVLSACTVTGFSSGKTETPVTPATAVLPPTTQPATQPVRIGLALGGGAARGFAHIGVIKMLEAQGIQI
DFITGTSAGSVVAAIYASGMSGLEMNRMALKMDEAMIADWALPFGTRFGGWLKGEALEKYINRLVKQKTIEQMRIPLGIV
ATDLASGKPILFRRGNTGQAVRASCSIPGVFQPVTISGRQYVDGGLVAPVPVTYVKQMGATFVIAVNISADPANQAVSGQ
ASMLLQTTAIMGQSISKTELAQADVVITPSLPFVKGSDFTARNEAILAGEQAAQAAMPLLREKLHLTQTIVGTPLPPH

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656039, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656043, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656037, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI260656041, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI116256487, Length=199, Percent_Identity=32.1608040201005, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI148727335, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI148727290, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=5e-18,
Organism=Escherichia coli, GI226510936, Length=314, Percent_Identity=30.2547770700637, Blast_Score=134, Evalue=1e-32,
Organism=Saccharomyces cerevisiae, GI6323581, Length=187, Percent_Identity=31.5508021390374, Blast_Score=85, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281376913, Length=187, Percent_Identity=29.9465240641711, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI28571388, Length=187, Percent_Identity=28.8770053475936, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 33156; Mature: 33156

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRRLFLGAAGASVLSACTVTGFSSGKTETPVTPATAVLPPTTQPATQPVRIGLALGGGA
CCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCC
ARGFAHIGVIKMLEAQGIQIDFITGTSAGSVVAAIYASGMSGLEMNRMALKMDEAMIADW
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ALPFGTRFGGWLKGEALEKYINRLVKQKTIEQMRIPLGIVATDLASGKPILFRRGNTGQA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCE
VRASCSIPGVFQPVTISGRQYVDGGLVAPVPVTYVKQMGATFVIAVNISADPANQAVSGQ
EEEECCCCCCCCCEEECCCEEECCCEECCCCHHHHHHCCCEEEEEEEECCCCCCCHHCCH
ASMLLQTTAIMGQSISKTELAQADVVITPSLPFVKGSDFTARNEAILAGEQAAQAAMPLL
HHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCEECCCCCCCCCEEEECHHHHHHHHHHH
REKLHLTQTIVGTPLPPH
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQRRLFLGAAGASVLSACTVTGFSSGKTETPVTPATAVLPPTTQPATQPVRIGLALGGGA
CCCEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCC
ARGFAHIGVIKMLEAQGIQIDFITGTSAGSVVAAIYASGMSGLEMNRMALKMDEAMIADW
HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ALPFGTRFGGWLKGEALEKYINRLVKQKTIEQMRIPLGIVATDLASGKPILFRRGNTGQA
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECCCCCE
VRASCSIPGVFQPVTISGRQYVDGGLVAPVPVTYVKQMGATFVIAVNISADPANQAVSGQ
EEEECCCCCCCCCEEECCCEEECCCEECCCCHHHHHHCCCEEEEEEEECCCCCCCHHCCH
ASMLLQTTAIMGQSISKTELAQADVVITPSLPFVKGSDFTARNEAILAGEQAAQAAMPLL
HHHHHHHHHHHCCCCCHHHHCCCCEEEECCCCCEECCCCCCCCCEEEECHHHHHHHHHHH
REKLHLTQTIVGTPLPPH
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]