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The map label for this gene is ycdI [C]

Identifier: 187927965

GI number: 187927965

Start: 921649

End: 922236

Strand: Direct

Name: ycdI [C]

Synonym: Rpic_0870

Alternate gene names: 187927965

Gene position: 921649-922236 (Clockwise)

Preceding gene: 187927963

Following gene: 187927968

Centisome position: 23.38

GC content: 63.1

Gene sequence:

>588_bases
ATGCCGATGCTTGAACCGTCCGCGCTGGACCAACTGTTCCACGCAGCCCGTACGCATAACGTGTGGCTGGACAAGCCGGT
CGATGACGAACTGCTGCACACGTTGTACGACACCGTGAAGTACGGTCCGACCGCAGCCAACAGCACGCCGGCCCGCTTCG
TGTTCGTCAAGAGCGCCGCCGCCAAGGAGCGCCTGATTCCGTGCATGTCGGCCGGCAATCAGGAAAAGACCCGCCAGGCA
CCCGTGGCCGTGATCGTTGCGTACGACACGCAATTCCACGAGCAACTGCCCAAGTTGTTCCCGCACACCGATGCGCGTTC
GTGGTACGCCGGCGACCAAGCCAAGATCAATGCCGCCGCGCTGATGAACGGCTCGCTGCAGGGCGGCTATCTGGTGCTCG
CCGCCCGCGCGCTCGGCCTGGACTGCGGCCCAATGGCCGGCTTCGATGCCAACAAGGTGAACGAGACGTTCTTCCCCGAT
GGCCAGTGGAAGGTCAACTTCATCATGAACATCGGCTACGGCGACGCCGAGAAGCTGCACCCGCGCAACCCGCGCCTGTC
GTTTGAAGAGGCGTGCAAGATCGTTTGA

Upstream 100 bases:

>100_bases
CGATGGAGGGCGGGGGTGCTCATCGGGGGGGCAGGTGTCCGGCGCATGCGGATACGGCGCATTACAATGCGGTCCTCAAC
TTTTTCCGGAGCACCCTGCA

Downstream 100 bases:

>100_bases
TCGACGGTCGGTCGCGCAAAGAAAACGGGGACTCGCATCAGACGGCGCAGTCCCCGTTTTTTATTCCTTCGGCGCTGGCG
TCTTCGGCCTGAATTCACAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 194

Protein sequence:

>195_residues
MPMLEPSALDQLFHAARTHNVWLDKPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKERLIPCMSAGNQEKTRQA
PVAVIVAYDTQFHEQLPKLFPHTDARSWYAGDQAKINAAALMNGSLQGGYLVLAARALGLDCGPMAGFDANKVNETFFPD
GQWKVNFIMNIGYGDAEKLHPRNPRLSFEEACKIV

Sequences:

>Translated_195_residues
MPMLEPSALDQLFHAARTHNVWLDKPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKERLIPCMSAGNQEKTRQA
PVAVIVAYDTQFHEQLPKLFPHTDARSWYAGDQAKINAAALMNGSLQGGYLVLAARALGLDCGPMAGFDANKVNETFFPD
GQWKVNFIMNIGYGDAEKLHPRNPRLSFEEACKIV
>Mature_194_residues
PMLEPSALDQLFHAARTHNVWLDKPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAAAKERLIPCMSAGNQEKTRQAP
VAVIVAYDTQFHEQLPKLFPHTDARSWYAGDQAKINAAALMNGSLQGGYLVLAARALGLDCGPMAGFDANKVNETFFPDG
QWKVNFIMNIGYGDAEKLHPRNPRLSFEEACKIV

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily

Homologues:

Organism=Escherichia coli, GI1787243, Length=192, Percent_Identity=52.6041666666667, Blast_Score=221, Evalue=3e-59,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y870_RALPJ (B2U8S6)

Other databases:

- EMBL:   CP001068
- RefSeq:   YP_001898452.1
- ProteinModelPortal:   B2U8S6
- SMR:   B2U8S6
- GeneID:   6286342
- GenomeReviews:   CP001068_GR
- KEGG:   rpi:Rpic_0870
- HOGENOM:   HBG322534
- OMA:   MGPTSAN
- ProtClustDB:   PRK05365
- HAMAP:   MF_01204
- InterPro:   IPR000415

Pfam domain/function: PF00881 Nitroreductase; SSF55469 Nitroreductase

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21536; Mature: 21405

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPMLEPSALDQLFHAARTHNVWLDKPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAA
CCCCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHH
AKERLIPCMSAGNQEKTRQAPVAVIVAYDTQFHEQLPKLFPHTDARSWYAGDQAKINAAA
HHHHHHHHHCCCCCCHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCEECCCCCEEEEEE
LMNGSLQGGYLVLAARALGLDCGPMAGFDANKVNETFFPDGQWKVNFIMNIGYGDAEKLH
EECCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCC
PRNPRLSFEEACKIV
CCCCCCCHHHHCCCC
>Mature Secondary Structure 
PMLEPSALDQLFHAARTHNVWLDKPVDDELLHTLYDTVKYGPTAANSTPARFVFVKSAA
CCCCHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECHH
AKERLIPCMSAGNQEKTRQAPVAVIVAYDTQFHEQLPKLFPHTDARSWYAGDQAKINAAA
HHHHHHHHHCCCCCCHHCCCCEEEEEEECCHHHHHHHHHCCCCCCCCEECCCCCEEEEEE
LMNGSLQGGYLVLAARALGLDCGPMAGFDANKVNETFFPDGQWKVNFIMNIGYGDAEKLH
EECCCCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHCC
PRNPRLSFEEACKIV
CCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA