Click here to switch to the map view.

The map label for this gene is ycdC [C]

Identifier: 187927968

GI number: 187927968

Start: 923927

End: 924622

Strand: Direct

Name: ycdC [C]

Synonym: Rpic_0873

Alternate gene names: 187927968

Gene position: 923927-924622 (Clockwise)

Preceding gene: 187927965

Following gene: 187927971

Centisome position: 23.43

GC content: 62.93

Gene sequence:

>696_bases
ATGCCGTCTCACCCAGCCGCGCCACTCGCCGACATCGAAGCCGATGCTCACGGCGGATCCGCCGCACCCCGCACGCGTCG
CGACCCCGCCGGTACGCGCCGACGCATCCTTGCTGCTGCGATCGAAGAGTTTGCGCGCGGTGGGTTTGCAGGCGCGCGCG
TTGACGCCATCGCCCGTCGCGCCGAGACCAACGAGCGCATGCTGTATTACTACTACGGCAGCAAGGAAAAACTCTTCCTG
ACCGTGCTCGAGCACATGTATTTCCGCTTCAAAGAGGCGGAAGAGCAGGTACAGATCGAGTCGTCGGACCCGCGTGAGGC
GGTCATCCAGCTTGCGCGGTTCGTCTGGGATTTCTATTACGAGAACCCCGAGTTCATCCGTTTGCTCAACAGCGAAAACC
TGCATGAGGCGCGGCATCTGAAGACGTCGCCACACCTCGTCGAGCTGGTCAACCCGGTCATCGAGGTGCTGCGCGGCGTG
GTGGAGCGCGGCCAGCGCAGCGGCATCTTTCGTGACGACATCGATGTGTCGCGCCTGTACCTCACGATTTCGGCGCTCGG
CTATTACGTGCTGTCCAACCGCTACACGATCAGTGCCGTGGTGGGCCGCGACATTGCCTCGGCCGACGAGCACGAGGCGT
TCGCACAGCTGCATATCAAGATGCTGCTGGCGTATCTGGAGCGGCCCAAGGGCTGA

Upstream 100 bases:

>100_bases
TTTGGCCCCCGCGCAAGGCGTGCATGCCCTGACATCGCATACGGCGGGCATGTCTTGACCGTATGACATAATTCCTGCGT
TCTAAACGGACCGACGTGCC

Downstream 100 bases:

>100_bases
TCGGCCGAAGCGCCATCGCACAACAAAAAAGCCTCGCGGTTGCGAGGCTTTTTCTTGGGGGCTTCAGGGTCAGGCGACAG
CCTTGATACGAGGAGCATTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; TetR Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator TetR/ArcR Family; HTH-Type Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR Family Transcriptional Regulatory Protein; TetR-Family Transcriptional Regulator; TetR-Family Transcriptional Regulatory Protein; TRANSCRIPTIONal REGULATOR TetR Family; Transcription Regulator Protein Tetr-Like; Transcription Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR; TetR/AcrR Family Transcriptional Regulator

Number of amino acids: Translated: 231; Mature: 230

Protein sequence:

>231_residues
MPSHPAAPLADIEADAHGGSAAPRTRRDPAGTRRRILAAAIEEFARGGFAGARVDAIARRAETNERMLYYYYGSKEKLFL
TVLEHMYFRFKEAEEQVQIESSDPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKTSPHLVELVNPVIEVLRGV
VERGQRSGIFRDDIDVSRLYLTISALGYYVLSNRYTISAVVGRDIASADEHEAFAQLHIKMLLAYLERPKG

Sequences:

>Translated_231_residues
MPSHPAAPLADIEADAHGGSAAPRTRRDPAGTRRRILAAAIEEFARGGFAGARVDAIARRAETNERMLYYYYGSKEKLFL
TVLEHMYFRFKEAEEQVQIESSDPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKTSPHLVELVNPVIEVLRGV
VERGQRSGIFRDDIDVSRLYLTISALGYYVLSNRYTISAVVGRDIASADEHEAFAQLHIKMLLAYLERPKG
>Mature_230_residues
PSHPAAPLADIEADAHGGSAAPRTRRDPAGTRRRILAAAIEEFARGGFAGARVDAIARRAETNERMLYYYYGSKEKLFLT
VLEHMYFRFKEAEEQVQIESSDPREAVIQLARFVWDFYYENPEFIRLLNSENLHEARHLKTSPHLVELVNPVIEVLRGVV
ERGQRSGIFRDDIDVSRLYLTISALGYYVLSNRYTISAVVGRDIASADEHEAFAQLHIKMLLAYLERPKG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26309; Mature: 26178

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSHPAAPLADIEADAHGGSAAPRTRRDPAGTRRRILAAAIEEFARGGFAGARVDAIARR
CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AETNERMLYYYYGSKEKLFLTVLEHMYFRFKEAEEQVQIESSDPREAVIQLARFVWDFYY
HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHC
ENPEFIRLLNSENLHEARHLKTSPHLVELVNPVIEVLRGVVERGQRSGIFRDDIDVSRLY
CCHHHEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LTISALGYYVLSNRYTISAVVGRDIASADEHEAFAQLHIKMLLAYLERPKG
HHHHHHHHHHHCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PSHPAAPLADIEADAHGGSAAPRTRRDPAGTRRRILAAAIEEFARGGFAGARVDAIARR
CCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
AETNERMLYYYYGSKEKLFLTVLEHMYFRFKEAEEQVQIESSDPREAVIQLARFVWDFYY
HCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHC
ENPEFIRLLNSENLHEARHLKTSPHLVELVNPVIEVLRGVVERGQRSGIFRDDIDVSRLY
CCHHHEEEECCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LTISALGYYVLSNRYTISAVVGRDIASADEHEAFAQLHIKMLLAYLERPKG
HHHHHHHHHHHCCCEEEEHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA