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The map label for this gene is jag [H]

Identifier: 187935358

GI number: 187935358

Start: 3797733

End: 3798359

Strand: Reverse

Name: jag [H]

Synonym: CLL_A3601

Alternate gene names: 187935358

Gene position: 3798359-3797733 (Counterclockwise)

Preceding gene: 187934380

Following gene: 187932414

Centisome position: 99.95

GC content: 29.19

Gene sequence:

>627_bases
ATGAGATCAGTAGAATTAGAGGGGAAAAATGTTGAAGAAGCCTTAAATAAAGCTTTACTTGAGTTAAATACAACAAAAGA
TATGGTAGATGTTGAGGTTTTACAACGTGGTTCAAAAGGGTTATTTGGATTTATAAGCACTAAGCGAGCTAAGATAAAAG
TAACCTTAAAACATAACTATATTGATGATATAAGAAATTTTATAAATAAAATTCTTGATTCTATGAGCATAAAGGCAGAA
ATAGATATTAATGAACAAGATGATGTGATAAATATAAGTTTGTCAGGTGATAAACTAGGATTGCTTATCGGCTATAGGGG
AGAGACCTTAGATTCATTACAATGCCTTATTTCTTTAATGATTAACAAAGATAGCAGCATTCAATATAAAAGAATCGTAC
TTGATATAGAGAATTATAGAAAAAAGAGAGAAGAAACTCTCAAGAATGTTGCAAATAAAACTGCTGAAAAAGTAAAGAGA
ACTGGCAGGCTATTTAGACTAGAACCAATGAATCCTTATGAAAGAAGAATAATTCATTCAGCTTTACAAGATAATTCATT
TGTTAACACTTATAGTGAAGGAAAAGAACCTTTTAGAAGAGTTGTTGTAGAACTTAAAAAGAATTAA

Upstream 100 bases:

>100_bases
AAGAACCTAAGAATTTAGCTAGTACAAAAAAGAAAAGTAAAAAGAAAAAATAATTTTTTAATATATACTTTCTTTATATA
ATAAGGTGGTGAATTAGGGA

Downstream 100 bases:

>100_bases
AAAGGAAAGCCTTGATGAGGCTTTCTTTTTTGGTTTTAATTTAATATATAGCTATATAAAGAAGCAAAATAGCTTTGTTA
TAGTACTTTTGAATGATTAA

Product: protein jag

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MRSVELEGKNVEEALNKALLELNTTKDMVDVEVLQRGSKGLFGFISTKRAKIKVTLKHNYIDDIRNFINKILDSMSIKAE
IDINEQDDVINISLSGDKLGLLIGYRGETLDSLQCLISLMINKDSSIQYKRIVLDIENYRKKREETLKNVANKTAEKVKR
TGRLFRLEPMNPYERRIIHSALQDNSFVNTYSEGKEPFRRVVVELKKN

Sequences:

>Translated_208_residues
MRSVELEGKNVEEALNKALLELNTTKDMVDVEVLQRGSKGLFGFISTKRAKIKVTLKHNYIDDIRNFINKILDSMSIKAE
IDINEQDDVINISLSGDKLGLLIGYRGETLDSLQCLISLMINKDSSIQYKRIVLDIENYRKKREETLKNVANKTAEKVKR
TGRLFRLEPMNPYERRIIHSALQDNSFVNTYSEGKEPFRRVVVELKKN
>Mature_208_residues
MRSVELEGKNVEEALNKALLELNTTKDMVDVEVLQRGSKGLFGFISTKRAKIKVTLKHNYIDDIRNFINKILDSMSIKAE
IDINEQDDVINISLSGDKLGLLIGYRGETLDSLQCLISLMINKDSSIQYKRIVLDIENYRKKREETLKNVANKTAEKVKR
TGRLFRLEPMNPYERRIIHSALQDNSFVNTYSEGKEPFRRVVVELKKN

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 23992; Mature: 23992

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50823 KH_TYPE_2 ; PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSVELEGKNVEEALNKALLELNTTKDMVDVEVLQRGSKGLFGFISTKRAKIKVTLKHNY
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCC
IDDIRNFINKILDSMSIKAEIDINEQDDVINISLSGDKLGLLIGYRGETLDSLQCLISLM
HHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
INKDSSIQYKRIVLDIENYRKKREETLKNVANKTAEKVKRTGRLFRLEPMNPYERRIIHS
HCCCCCCEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
ALQDNSFVNTYSEGKEPFRRVVVELKKN
HHHCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRSVELEGKNVEEALNKALLELNTTKDMVDVEVLQRGSKGLFGFISTKRAKIKVTLKHNY
CCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEECCCEEEEEEEECCC
IDDIRNFINKILDSMSIKAEIDINEQDDVINISLSGDKLGLLIGYRGETLDSLQCLISLM
HHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHH
INKDSSIQYKRIVLDIENYRKKREETLKNVANKTAEKVKRTGRLFRLEPMNPYERRIIHS
HCCCCCCEEEHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
ALQDNSFVNTYSEGKEPFRRVVVELKKN
HHHCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]