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The map label for this gene is glgB [H]

Identifier: 187934757

GI number: 187934757

Start: 3602858

End: 3605095

Strand: Reverse

Name: glgB [H]

Synonym: CLL_A3417

Alternate gene names: 187934757

Gene position: 3605095-3602858 (Counterclockwise)

Preceding gene: 187933951

Following gene: 187935715

Centisome position: 94.86

GC content: 28.11

Gene sequence:

>2238_bases
TTGAGTAATGCTTATACCAAGAAGATAGATCCTGAATTGGATATTGAATCAAAAGAAATTATATCAGAAGAAATACTAAA
AGACACAGCAAAAGATACAAGTAAAGCTGCTAAAAAAATAAGTTCGTCTAAAAAATCAAATCGAACTACTAAGAAAAAAG
CCTCAAGTGTAAAAACAAAAGCAAATTCAAGCAATAGTAACAGTGAAAATAAAGAAGTAAAAAGCAATACTAAAAAATCA
AATTCTCATGAATTAAATAAAGAAAACATTAAAAAGTTTCATGAAGGAACTAACTATGAAGCTTATAAGATTTTAGGATC
TCATATAAAAACAGAAAAAAGAAAAAAAGGAGTAAGGTTTACAACCTGGGCGCCTAATGCAAAAGATGCTTATTTAGTTG
GAGATTTTAATGATTTTAAAATAGATGAAAATTATAAACTTGAAAAGTTAGATGAAAATGGATTGTGGAGTGTATTTTTA
CCACATATAAATGATGGTAGTAAATATAAATACTGCTTTATAGATGAATTAGGAAATCAATCAGATTTTAAATCAGATCC
TTATGCAATACAAAGTGAACTTAGACCTAAGACTGCATCAATAGTGTTTGAATTAGATAAGTTTAAATGGAATGATAAAA
AATGGATGAGTAAAAGAAATAAATTAAATATATATGAAATGCCAATGAATATATATGAAATGCATTTAGGTTCATGGAAA
CGAAACGAAGAGGGAGAATTTTTAACATATGCGCAGTTGAGTGAAATTTTACCAAAATATCTTAAAGATATGGGTTATAC
TTACGTTGAATTGATGCCACTTGGTGAACATCCATTAGATGCATCTTGGGGATATCAAGGAACTGGATATTATTCTCCAA
CAAGTAGATATGGAGATTTAAATGGTTTAAAAATGCTTATAGAAAAGTTACATGATGAAGAAATTGGTGTAATAATTGAC
TGGGTTCCAGGACATTTTTGTAAAGATTCTCATGGGCTATATAAATTTGATGGAACTACAACATATGAGTATAGCGAAGA
ATGGAGATCGGAAAATTGTGGTTGGGGAACTTGTAATTTTGATTTAGGAAAACCAGAAGTTCGTAGTTACTTAATATCAA
ATGCTCTGTATTGGATAAGAGAATTTCATATAGATGGAATTAGAGTTGATGCTGTATCAAGTATTCTTTACTTAGATTAT
GGTAAAGAAGAAGGTGAATGGGAGCCTAATCAATTTGGAGGAAATGCAAATTTAGAAGGTATAGAGTTTTTAAAACAATT
AAACAAGGCTGTTAAAGCGGAAGATTCTAATATATTAATGATTGCAGAAGAATCAACATCATGGCCTAATGTTAGTAAAT
CTAATAATGGAGAATCATTAGGATTTAATTTTAAATGGAATATGGGATGGATGAACGATACTTTAGAATATATAAAAGTA
GATCCTATATATAGAAAATTCAACCATGATAAAGTAACTTTTTCAATGATGTACAATTATTCAGAAAATTTTATATTACC
AATATCACATGATGAAGTAGTACATGGTAAAAAATCATTGGTTGATAAAATGTGGGGAGATTATTGGAATAAGTTTTCTG
GCTTAAGATTGTTTGCATCTTATATGATGGGACACCCAGGTAAAAAGTTATTATTTATGGGATGTGAATTTGGACAATTT
ATAGAGTGGAGAGAATATGAAGAATTAGAGTGGTTTTTAATAGATAAATATGATATGCATAGACAGACACAAGTTTTCTT
TAAAGATTTAAATCATTTTTATATAGATAATAAAGCACTTTGGGAATTAGATCATGATGAAAAAGGTTTTACCTGGATTG
ATGCAGATAACAATTCTCAAAGTATACTTGAGTTTATAAGAAGAAGTAAAGATGACAATGATACTTTAATTTTTATTAGT
AATTTTACTCCAATTGTATATTATGACTATAAAATTGGTGTTCCATTTTTAGGTGAATATGAAGAAGTATTTAATACAGA
TGATAGTAAGTATGGTGGTTCAGGACAAGTTATGGGTGAAACATTAATATCAGAAAAATTGGAATATCACAATCAACCAT
ATTCATTACAAATTAAAGTACCTCCTATGGCAACATTAGTGCTAAAAATAAAATCTATATATAAAGATGTTGAAGAAAAA
ACTTTTATGAAGAAAGTGACTGAAATAGCAGAGATAGATAGAGATGAGTTATTAGATAAAATTGAGGATATAAAATAA

Upstream 100 bases:

>100_bases
ATATTCAATAATTTGGTAAAATAACAATTGAAACTTTGGTATGTTACTAGATATGGTAAAAAATATAGTAAATGGATAAA
AGGTAAATGGAGGGGATAAC

Downstream 100 bases:

>100_bases
TTAGATATTTATGAAGATTGTGTTAGTTTGTTATTAAAAATAGATGAGTATTTTTCAAAGGATAGTGTAAAGTACGCTAT
GAAAAAAATATTAGAAATAA

Product: glycogen branching enzyme

Products: NA

Alternate protein names: 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1; Glycogen-branching enzyme 1; BE 1 [H]

Number of amino acids: Translated: 745; Mature: 744

Protein sequence:

>745_residues
MSNAYTKKIDPELDIESKEIISEEILKDTAKDTSKAAKKISSSKKSNRTTKKKASSVKTKANSSNSNSENKEVKSNTKKS
NSHELNKENIKKFHEGTNYEAYKILGSHIKTEKRKKGVRFTTWAPNAKDAYLVGDFNDFKIDENYKLEKLDENGLWSVFL
PHINDGSKYKYCFIDELGNQSDFKSDPYAIQSELRPKTASIVFELDKFKWNDKKWMSKRNKLNIYEMPMNIYEMHLGSWK
RNEEGEFLTYAQLSEILPKYLKDMGYTYVELMPLGEHPLDASWGYQGTGYYSPTSRYGDLNGLKMLIEKLHDEEIGVIID
WVPGHFCKDSHGLYKFDGTTTYEYSEEWRSENCGWGTCNFDLGKPEVRSYLISNALYWIREFHIDGIRVDAVSSILYLDY
GKEEGEWEPNQFGGNANLEGIEFLKQLNKAVKAEDSNILMIAEESTSWPNVSKSNNGESLGFNFKWNMGWMNDTLEYIKV
DPIYRKFNHDKVTFSMMYNYSENFILPISHDEVVHGKKSLVDKMWGDYWNKFSGLRLFASYMMGHPGKKLLFMGCEFGQF
IEWREYEELEWFLIDKYDMHRQTQVFFKDLNHFYIDNKALWELDHDEKGFTWIDADNNSQSILEFIRRSKDDNDTLIFIS
NFTPIVYYDYKIGVPFLGEYEEVFNTDDSKYGGSGQVMGETLISEKLEYHNQPYSLQIKVPPMATLVLKIKSIYKDVEEK
TFMKKVTEIAEIDRDELLDKIEDIK

Sequences:

>Translated_745_residues
MSNAYTKKIDPELDIESKEIISEEILKDTAKDTSKAAKKISSSKKSNRTTKKKASSVKTKANSSNSNSENKEVKSNTKKS
NSHELNKENIKKFHEGTNYEAYKILGSHIKTEKRKKGVRFTTWAPNAKDAYLVGDFNDFKIDENYKLEKLDENGLWSVFL
PHINDGSKYKYCFIDELGNQSDFKSDPYAIQSELRPKTASIVFELDKFKWNDKKWMSKRNKLNIYEMPMNIYEMHLGSWK
RNEEGEFLTYAQLSEILPKYLKDMGYTYVELMPLGEHPLDASWGYQGTGYYSPTSRYGDLNGLKMLIEKLHDEEIGVIID
WVPGHFCKDSHGLYKFDGTTTYEYSEEWRSENCGWGTCNFDLGKPEVRSYLISNALYWIREFHIDGIRVDAVSSILYLDY
GKEEGEWEPNQFGGNANLEGIEFLKQLNKAVKAEDSNILMIAEESTSWPNVSKSNNGESLGFNFKWNMGWMNDTLEYIKV
DPIYRKFNHDKVTFSMMYNYSENFILPISHDEVVHGKKSLVDKMWGDYWNKFSGLRLFASYMMGHPGKKLLFMGCEFGQF
IEWREYEELEWFLIDKYDMHRQTQVFFKDLNHFYIDNKALWELDHDEKGFTWIDADNNSQSILEFIRRSKDDNDTLIFIS
NFTPIVYYDYKIGVPFLGEYEEVFNTDDSKYGGSGQVMGETLISEKLEYHNQPYSLQIKVPPMATLVLKIKSIYKDVEEK
TFMKKVTEIAEIDRDELLDKIEDIK
>Mature_744_residues
SNAYTKKIDPELDIESKEIISEEILKDTAKDTSKAAKKISSSKKSNRTTKKKASSVKTKANSSNSNSENKEVKSNTKKSN
SHELNKENIKKFHEGTNYEAYKILGSHIKTEKRKKGVRFTTWAPNAKDAYLVGDFNDFKIDENYKLEKLDENGLWSVFLP
HINDGSKYKYCFIDELGNQSDFKSDPYAIQSELRPKTASIVFELDKFKWNDKKWMSKRNKLNIYEMPMNIYEMHLGSWKR
NEEGEFLTYAQLSEILPKYLKDMGYTYVELMPLGEHPLDASWGYQGTGYYSPTSRYGDLNGLKMLIEKLHDEEIGVIIDW
VPGHFCKDSHGLYKFDGTTTYEYSEEWRSENCGWGTCNFDLGKPEVRSYLISNALYWIREFHIDGIRVDAVSSILYLDYG
KEEGEWEPNQFGGNANLEGIEFLKQLNKAVKAEDSNILMIAEESTSWPNVSKSNNGESLGFNFKWNMGWMNDTLEYIKVD
PIYRKFNHDKVTFSMMYNYSENFILPISHDEVVHGKKSLVDKMWGDYWNKFSGLRLFASYMMGHPGKKLLFMGCEFGQFI
EWREYEELEWFLIDKYDMHRQTQVFFKDLNHFYIDNKALWELDHDEKGFTWIDADNNSQSILEFIRRSKDDNDTLIFISN
FTPIVYYDYKIGVPFLGEYEEVFNTDDSKYGGSGQVMGETLISEKLEYHNQPYSLQIKVPPMATLVLKIKSIYKDVEEKT
FMKKVTEIAEIDRDELLDKIEDIK

Specific function: Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position [H]

COG id: COG0296

COG function: function code G; 1,4-alpha-glucan branching enzyme

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family [H]

Homologues:

Organism=Homo sapiens, GI189458812, Length=676, Percent_Identity=26.9230769230769, Blast_Score=172, Evalue=1e-42,
Organism=Escherichia coli, GI1789839, Length=616, Percent_Identity=45.1298701298701, Blast_Score=571, Evalue=1e-164,
Organism=Caenorhabditis elegans, GI17554896, Length=649, Percent_Identity=25.4237288135593, Blast_Score=166, Evalue=3e-41,
Organism=Caenorhabditis elegans, GI32564391, Length=608, Percent_Identity=24.8355263157895, Blast_Score=146, Evalue=4e-35,
Organism=Saccharomyces cerevisiae, GI6320826, Length=675, Percent_Identity=26.5185185185185, Blast_Score=167, Evalue=7e-42,
Organism=Drosophila melanogaster, GI28573410, Length=642, Percent_Identity=26.6355140186916, Blast_Score=179, Evalue=8e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006407
- InterPro:   IPR006048
- InterPro:   IPR013780
- InterPro:   IPR006047
- InterPro:   IPR004193
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR013783
- InterPro:   IPR014756 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF02806 Alpha-amylase_C; PF02922 CBM_48 [H]

EC number: =2.4.1.18 [H]

Molecular weight: Translated: 87059; Mature: 86928

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNAYTKKIDPELDIESKEIISEEILKDTAKDTSKAAKKISSSKKSNRTTKKKASSVKTK
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
ANSSNSNSENKEVKSNTKKSNSHELNKENIKKFHEGTNYEAYKILGSHIKTEKRKKGVRF
CCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEE
TTWAPNAKDAYLVGDFNDFKIDENYKLEKLDENGLWSVFLPHINDGSKYKYCFIDELGNQ
EEECCCCCCEEEEECCCCEEECCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCC
SDFKSDPYAIQSELRPKTASIVFELDKFKWNDKKWMSKRNKLNIYEMPMNIYEMHLGSWK
CCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHHHHCCCCC
RNEEGEFLTYAQLSEILPKYLKDMGYTYVELMPLGEHPLDASWGYQGTGYYSPTSRYGDL
CCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
NGLKMLIEKLHDEEIGVIIDWVPGHFCKDSHGLYKFDGTTTYEYSEEWRSENCGWGTCNF
HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEECCCEEECCHHHHCCCCCCCEEEEC
DLGKPEVRSYLISNALYWIREFHIDGIRVDAVSSILYLDYGKEEGEWEPNQFGGNANLEG
CCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH
IEFLKQLNKAVKAEDSNILMIAEESTSWPNVSKSNNGESLGFNFKWNMGWMNDTLEYIKV
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCHHCCHHHEEC
DPIYRKFNHDKVTFSMMYNYSENFILPISHDEVVHGKKSLVDKMWGDYWNKFSGLRLFAS
CHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YMMGHPGKKLLFMGCEFGQFIEWREYEELEWFLIDKYDMHRQTQVFFKDLNHFYIDNKAL
HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHCHHHHHHHHHHCCCEEECCCEE
WELDHDEKGFTWIDADNNSQSILEFIRRSKDDNDTLIFISNFTPIVYYDYKIGVPFLGEY
EEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEECCCCCCCH
EEVFNTDDSKYGGSGQVMGETLISEKLEYHNQPYSLQIKVPPMATLVLKIKSIYKDVEEK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
TFMKKVTEIAEIDRDELLDKIEDIK
HHHHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
SNAYTKKIDPELDIESKEIISEEILKDTAKDTSKAAKKISSSKKSNRTTKKKASSVKTK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC
ANSSNSNSENKEVKSNTKKSNSHELNKENIKKFHEGTNYEAYKILGSHIKTEKRKKGVRF
CCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCEE
TTWAPNAKDAYLVGDFNDFKIDENYKLEKLDENGLWSVFLPHINDGSKYKYCFIDELGNQ
EEECCCCCCEEEEECCCCEEECCCCCEEECCCCCEEEEEECCCCCCCCEEEEEEECCCCC
SDFKSDPYAIQSELRPKTASIVFELDKFKWNDKKWMSKRNKLNIYEMPMNIYEMHLGSWK
CCCCCCCHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHCCCCEEEECCCHHHHHHCCCCC
RNEEGEFLTYAQLSEILPKYLKDMGYTYVELMPLGEHPLDASWGYQGTGYYSPTSRYGDL
CCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
NGLKMLIEKLHDEEIGVIIDWVPGHFCKDSHGLYKFDGTTTYEYSEEWRSENCGWGTCNF
HHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEEECCCEEECCHHHHCCCCCCCEEEEC
DLGKPEVRSYLISNALYWIREFHIDGIRVDAVSSILYLDYGKEEGEWEPNQFGGNANLEG
CCCCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHEEEEEECCCCCCCCCCCCCCCCCCCHH
IEFLKQLNKAVKAEDSNILMIAEESTSWPNVSKSNNGESLGFNFKWNMGWMNDTLEYIKV
HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEECCCHHCCHHHEEC
DPIYRKFNHDKVTFSMMYNYSENFILPISHDEVVHGKKSLVDKMWGDYWNKFSGLRLFAS
CHHHHHCCCCEEEEEEEEECCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
YMMGHPGKKLLFMGCEFGQFIEWREYEELEWFLIDKYDMHRQTQVFFKDLNHFYIDNKAL
HHHCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCHHCHHHHHHHHHHCCCEEECCCEE
WELDHDEKGFTWIDADNNSQSILEFIRRSKDDNDTLIFISNFTPIVYYDYKIGVPFLGEY
EEECCCCCCCEEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCEEEEEEEEECCCCCCCH
EEVFNTDDSKYGGSGQVMGETLISEKLEYHNQPYSLQIKVPPMATLVLKIKSIYKDVEEK
HHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
TFMKKVTEIAEIDRDELLDKIEDIK
HHHHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11792842 [H]