| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is glgA [H]
Identifier: 187935715
GI number: 187935715
Start: 3601280
End: 3602716
Strand: Reverse
Name: glgA [H]
Synonym: CLL_A3416
Alternate gene names: 187935715
Gene position: 3602716-3601280 (Counterclockwise)
Preceding gene: 187934757
Following gene: 187933573
Centisome position: 94.8
GC content: 28.88
Gene sequence:
>1437_bases ATGAGAGTTTTATTTGTAGCATCAGAAGCACATCCGTTTATAAAAAGTGGGGGGTTAGGTGATGTAGCTGGAGCGTTACC TAAGGAATTAGCAAGAAAAGGTGTAGATGTTAGAGTTGTTATACCTAAATATAGAGAAATAAACAATGAACTAAAAAATA AACTCAGATTTAATAAGTGGTTTAACGTAGATGTTGGATGGCGCAATCAATATTGTGGAATATTAGAGTATGAATATGAT GGCGTAATTTATTATTTTGTGGATAATGAATACTATTTTTCTAGAGGTGGAATGTATGGTCATTATGATGATGCTGAAAG ATTTGCATTTTTTGATAGAGCAGTACTAGACATGATAAAACAATTGGATTGGAAACCAAATGTAATTCATTGTAATGATT GGCAAACTGGGATGATACCAGTTTTATTGAAATTGGAATATATGAGAAAAGATATGTTTTATTGGGATATAAAATCAGTA TTTTCAATTCACAATATAGCTTTCCAAGGAGTATTTGATCCAGTTATATTACCAGAACTGTTTGGATATGATTATGAACA ATATACAAATACTAATTTGAAATTTGATGACGGTGTAGGCTTTATGAAGGGTGCTATAAATTACTCAGATATGATAACAA CTGTTAGCTACAGCTACGCAGAAGAAATAAAAACTCCAGAGTTTGGAGAAAGACTAGATTGGCTATTAAGAGAAAAATCT TATATGTTAAGAGGAATATTAAATGGAATAGATTATGATGAATTTAATCCTAAAAATGATAGTTTAATAAATAAAAATTA TGATGTAAATAATATAAATGATAAATATGAAAATAAAAGAAATTTACAATCAGAACTAGGGTTAAGTGTTAATGAAAATA TACCTATGATTGCAATGGTAACAAGATTAACAAGTCAAAAAGGTTTAGATTTATTAGTGCATATTTCAGAGAGATTATTA CAAAATGATATTCAATTAGTTATTGTTGGAACTGGAGATAAACATTATGAAGATCATTTTAAGTGGTTAGATTATAAATA TGGAAATAAGGTCTCAGCAAATATTAGATTTGACAATAATTTGGCTCATAAAGCATATGCCGCATCAGATATGTTTTTAA TGCCATCATTATTTGAACCTTGTGGCTTAGGACAACTCATAGCTCTTAGATACGGAAGTATACCAATAGTAAGAGAAACT GGCGGTTTGAAAGATACAATTAGAGCTTACAATGAGTATACAGGTGAAGGTAATGGATTTAGTTTTTATAATTATAACGC AGATGAATTACTCCATATAATAGAGTACGCTTTAAAAATTTATTATGATAAAAACAAGTGGTCAAACCTTGTGAAAAATG CTATGAATTCTAATAATAGTTGGAGCAAATCAGCAGATGAATATTTAAATATGTACAAAGAATTAAGCTATAGATAA
Upstream 100 bases:
>100_bases AGATGAGTATTTTTCAAAGGATAGTGTAAAGTACGCTATGAAAAAAATATTAGAAATAACTAAATAATCAATATAAGTTA AGAATTTAGGGGGAAGAAGT
Downstream 100 bases:
>100_bases TCTAATAATTTTTCTAAAGGAGGGGTAATGATGATAGAAATGGATAAAAAAACATTCAAAAAAGCATATGTAAATAAATT TTTAGAAATGCACGGAATAG
Product: glycogen synthase
Products: NA
Alternate protein names: Starch [bacterial glycogen] synthase [H]
Number of amino acids: Translated: 478; Mature: 478
Protein sequence:
>478_residues MRVLFVASEAHPFIKSGGLGDVAGALPKELARKGVDVRVVIPKYREINNELKNKLRFNKWFNVDVGWRNQYCGILEYEYD GVIYYFVDNEYYFSRGGMYGHYDDAERFAFFDRAVLDMIKQLDWKPNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSV FSIHNIAFQGVFDPVILPELFGYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKS YMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGLSVNENIPMIAMVTRLTSQKGLDLLVHISERLL QNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNNLAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRET GGLKDTIRAYNEYTGEGNGFSFYNYNADELLHIIEYALKIYYDKNKWSNLVKNAMNSNNSWSKSADEYLNMYKELSYR
Sequences:
>Translated_478_residues MRVLFVASEAHPFIKSGGLGDVAGALPKELARKGVDVRVVIPKYREINNELKNKLRFNKWFNVDVGWRNQYCGILEYEYD GVIYYFVDNEYYFSRGGMYGHYDDAERFAFFDRAVLDMIKQLDWKPNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSV FSIHNIAFQGVFDPVILPELFGYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKS YMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGLSVNENIPMIAMVTRLTSQKGLDLLVHISERLL QNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNNLAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRET GGLKDTIRAYNEYTGEGNGFSFYNYNADELLHIIEYALKIYYDKNKWSNLVKNAMNSNNSWSKSADEYLNMYKELSYR >Mature_478_residues MRVLFVASEAHPFIKSGGLGDVAGALPKELARKGVDVRVVIPKYREINNELKNKLRFNKWFNVDVGWRNQYCGILEYEYD GVIYYFVDNEYYFSRGGMYGHYDDAERFAFFDRAVLDMIKQLDWKPNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSV FSIHNIAFQGVFDPVILPELFGYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKS YMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGLSVNENIPMIAMVTRLTSQKGLDLLVHISERLL QNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNNLAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRET GGLKDTIRAYNEYTGEGNGFSFYNYNADELLHIIEYALKIYYDKNKWSNLVKNAMNSNNSWSKSADEYLNMYKELSYR
Specific function: Synthesizes alpha-1,4-glucan chains using ADP-glucose [H]
COG id: COG0297
COG function: function code G; Glycogen synthase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 1 family. Bacterial/plant glycogen synthase subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789836, Length=497, Percent_Identity=34.6076458752515, Blast_Score=300, Evalue=1e-82,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011835 - InterPro: IPR001296 - InterPro: IPR013534 [H]
Pfam domain/function: PF08323 Glyco_transf_5; PF00534 Glycos_transf_1 [H]
EC number: =2.4.1.21 [H]
Molecular weight: Translated: 55806; Mature: 55806
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLFVASEAHPFIKSGGLGDVAGALPKELARKGVDVRVVIPKYREINNELKNKLRFNKW CEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCE FNVDVGWRNQYCGILEYEYDGVIYYFVDNEYYFSRGGMYGHYDDAERFAFFDRAVLDMIK EEEEECCCCCCCEEEEEEECCEEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH QLDWKPNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSVFSIHNIAFQGVFDPVILPEL HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH FGYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKS HCCCHHHHCCCCCEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGLSVNENIPMIAMV HHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH TRLTSQKGLDLLVHISERLLQNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNN HHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHEEEEECCCEEEEEEEECCC LAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRETGGLKDTIRAYNEYTGEGNGF CCHHHHHCCCCEECHHHCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCE SFYNYNADELLHIIEYALKIYYDKNKWSNLVKNAMNSNNSWSKSADEYLNMYKELSYR EEECCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MRVLFVASEAHPFIKSGGLGDVAGALPKELARKGVDVRVVIPKYREINNELKNKLRFNKW CEEEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCE FNVDVGWRNQYCGILEYEYDGVIYYFVDNEYYFSRGGMYGHYDDAERFAFFDRAVLDMIK EEEEECCCCCCCEEEEEEECCEEEEEECCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH QLDWKPNVIHCNDWQTGMIPVLLKLEYMRKDMFYWDIKSVFSIHNIAFQGVFDPVILPEL HCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH FGYDYEQYTNTNLKFDDGVGFMKGAINYSDMITTVSYSYAEEIKTPEFGERLDWLLREKS HCCCHHHHCCCCCEECCCCCHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH YMLRGILNGIDYDEFNPKNDSLINKNYDVNNINDKYENKRNLQSELGLSVNENIPMIAMV HHHHHHHCCCCCCCCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHH TRLTSQKGLDLLVHISERLLQNDIQLVIVGTGDKHYEDHFKWLDYKYGNKVSANIRFDNN HHHHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHEEEEECCCEEEEEEEECCC LAHKAYAASDMFLMPSLFEPCGLGQLIALRYGSIPIVRETGGLKDTIRAYNEYTGEGNGF CCHHHHHCCCCEECHHHCCCCCCCCEEEEEECCCEEEECCCCCHHHHHHHHHCCCCCCCE SFYNYNADELLHIIEYALKIYYDKNKWSNLVKNAMNSNNSWSKSADEYLNMYKELSYR EEECCCHHHHHHHHHHHHHEEECCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA