| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is tap [C]
Identifier: 187934642
GI number: 187934642
Start: 3265049
End: 3267151
Strand: Reverse
Name: tap [C]
Synonym: CLL_A3150
Alternate gene names: 187934642
Gene position: 3267151-3265049 (Counterclockwise)
Preceding gene: 187935319
Following gene: 187932981
Centisome position: 85.97
GC content: 28.67
Gene sequence:
>2103_bases ATGAAAAATAAAATCCAGGTTTATTTTAAGAAAGCATCTGTAAAATCTAAATTAATGTTAATAATTATACCAATAGTTGC TTTTGGATTATTGTTATTAACATCAATAACATATGGTTCTGCAAAAAATATGATACAAAAAGAATTAGTTAATCTTATGT CAGAAAGGGAAGCAGAAGCTGTAAACAATATTGATACTTGGTTAAATTCAAGACTTTCAGAAGTTAAGGAAGTAGCTCAA AGTCCTATATTAGAACGTGTTTTAGAACTTAATCCGGACTTGAATTTAGAAAATAATGATGAATCTATAGCTCTTATAGA CCAATTAAATTTATCACGTTGGACTTTTGTTAATAATACATATCCTGATGAATATGCAGCTTTGCATATTTTGAGTGGAA TTTCATCGAATGAATGGAAAAATGTAGAAAATTCAAACAAACTTTTAGCAAGATATTATAATGTAAATGGGGATGAAAAT AAAACTTCTCCATGGGCTAAAGCAGCCTTAGAAGAAACCTTTAAAAAATTTTCTAATAATAATGGTCCTTATGATATAAT TTTAAATCCTACATATTCTGAAGCATATAAGAGAAATGTTGTTATGATGATTGCTTGGAAAAAAGATGGAATGGGAGAGG CTAAAATAGGGGCAGCTTCTAGTTTAGCAATAGAAGTAGTAGAAAATAAAGTAAAAGAATTAAAATATGGTAAAAAGGGA TATGGAATGTTAATAGCCGATGATGGGACATTCATATCACATCCGAATCAAGAATATGTTATGAAAGAAAATATAAATAC ATTAGAAGATAAGGAAATGCTAAAGCTATCATCTACTATAAAATCACAAGATAAAGGTATAATTAAACTGGGTATGGGTA CTGGAAAGAAGCTAGCATTTTATCAGAAAGTACCTGTAACTAATTGGATGGTAGTGAATGTAGTATATGAAAGTGAACTT TTCTCAATTTGTACTAAATTATTAATATTAATGATAATAATAGCAATATTAATTATAATAGTGGTTATTTTAACAATATA TAAGTTTTCAACTAATATGCTTAAACCATTAACAAATATAAGTATATTTGCTGATGAAGTAGCAGCTGGCAATTTAAGTG CAAATATAAATATTAATTCAGATGATGAATTTGGAAAAGTTGCTAAAGCATTAAATAATACAGCTCAATATTTAAAAAAT TATATTTCTGAAATAGATGAAGTACTAGGAAGTATTTCTAATGGAAACATTAATGTAAATGTAGAAGGTGAATATAAAGG TGATTTTGTAGGTATAAAAGAATCTTTAATAAAAATAATATCATCCTTAAATAATACATTTACTCAAATAAGAGAAGCAA CACAACAAGTTTCTAGTGGATCTCAGGAGGTAGCTTCAGTAGCTCAAGTATTAGCACAAGGAGCATCTGATCAAGCAAGT TCAATAGATGAGTTAACAGCATCAATTGGGGACATTAATGAACAATTAAAAGGTACAGCAGAACATGCAAATGGAACTAA TAAAATTGTAAATCAATTAGTTACATATATTGAAGATAGTAACAAACAAATGGACGGTATGTTAAGTGCTATGAGCAACA TTGATGTTTCATCTAAAAATATACAAAATATAATAAAAACAATAGCTGATATAGCTGAACAAACTAATCTCTTAGCTTTA AATGCAGCAATAGAAGCAGCAAGAGCAGGAGAAGCAGGTAAGGGGTTTGCAGTAGTTGCTGATGAAGTAAGAATGCTTGC AGAACAAAGTTCACAAGCAGTTAAGAGAACAACAGAACTTATTGAAAATTCTATAGAATCTGTTAATGAAGGTAAAGTGA TAGCAGATAATACAGCAAGTTCATTAAAAGAAGTTGTAGAACATACTAAAGGAGCCACTGAATTAGTTATTAATATAGCT AATTTAGCAGAAGAACAATCAGAATCTCTTAATAAAATAAATGAAAGAATAGAAGAAATAGCTAATGTAATTCAATCTAA TTCATCAATAGCAGAAGAAAGTACAGCTGCTAGTGAAGAATTAACAGCACAAGCGGAAAGCTTAGATTACATGGTTGCAC AATTTGAATTAAAAGAAGATTAG
Upstream 100 bases:
>100_bases TTTTAAGTAGAACTATAAATTTTTAAATATTATTATAGGTTACAATTTTAAAAATTATTAAATATGTAAAATTATAAAAA ATATTATTAGGAGGGTGATC
Downstream 100 bases:
>100_bases TATATTCTGTGTTTTAACAAAAAAAGTTAATATTATAGTATAAAGCTCGTGGACTCAGGAATTTACTTTATGAACTCTAA AAATAAAGCTTAGTCTAATT
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 700; Mature: 700
Protein sequence:
>700_residues MKNKIQVYFKKASVKSKLMLIIIPIVAFGLLLLTSITYGSAKNMIQKELVNLMSEREAEAVNNIDTWLNSRLSEVKEVAQ SPILERVLELNPDLNLENNDESIALIDQLNLSRWTFVNNTYPDEYAALHILSGISSNEWKNVENSNKLLARYYNVNGDEN KTSPWAKAALEETFKKFSNNNGPYDIILNPTYSEAYKRNVVMMIAWKKDGMGEAKIGAASSLAIEVVENKVKELKYGKKG YGMLIADDGTFISHPNQEYVMKENINTLEDKEMLKLSSTIKSQDKGIIKLGMGTGKKLAFYQKVPVTNWMVVNVVYESEL FSICTKLLILMIIIAILIIIVVILTIYKFSTNMLKPLTNISIFADEVAAGNLSANININSDDEFGKVAKALNNTAQYLKN YISEIDEVLGSISNGNINVNVEGEYKGDFVGIKESLIKIISSLNNTFTQIREATQQVSSGSQEVASVAQVLAQGASDQAS SIDELTASIGDINEQLKGTAEHANGTNKIVNQLVTYIEDSNKQMDGMLSAMSNIDVSSKNIQNIIKTIADIAEQTNLLAL NAAIEAARAGEAGKGFAVVADEVRMLAEQSSQAVKRTTELIENSIESVNEGKVIADNTASSLKEVVEHTKGATELVINIA NLAEEQSESLNKINERIEEIANVIQSNSSIAEESTAASEELTAQAESLDYMVAQFELKED
Sequences:
>Translated_700_residues MKNKIQVYFKKASVKSKLMLIIIPIVAFGLLLLTSITYGSAKNMIQKELVNLMSEREAEAVNNIDTWLNSRLSEVKEVAQ SPILERVLELNPDLNLENNDESIALIDQLNLSRWTFVNNTYPDEYAALHILSGISSNEWKNVENSNKLLARYYNVNGDEN KTSPWAKAALEETFKKFSNNNGPYDIILNPTYSEAYKRNVVMMIAWKKDGMGEAKIGAASSLAIEVVENKVKELKYGKKG YGMLIADDGTFISHPNQEYVMKENINTLEDKEMLKLSSTIKSQDKGIIKLGMGTGKKLAFYQKVPVTNWMVVNVVYESEL FSICTKLLILMIIIAILIIIVVILTIYKFSTNMLKPLTNISIFADEVAAGNLSANININSDDEFGKVAKALNNTAQYLKN YISEIDEVLGSISNGNINVNVEGEYKGDFVGIKESLIKIISSLNNTFTQIREATQQVSSGSQEVASVAQVLAQGASDQAS SIDELTASIGDINEQLKGTAEHANGTNKIVNQLVTYIEDSNKQMDGMLSAMSNIDVSSKNIQNIIKTIADIAEQTNLLAL NAAIEAARAGEAGKGFAVVADEVRMLAEQSSQAVKRTTELIENSIESVNEGKVIADNTASSLKEVVEHTKGATELVINIA NLAEEQSESLNKINERIEEIANVIQSNSSIAEESTAASEELTAQAESLDYMVAQFELKED >Mature_700_residues MKNKIQVYFKKASVKSKLMLIIIPIVAFGLLLLTSITYGSAKNMIQKELVNLMSEREAEAVNNIDTWLNSRLSEVKEVAQ SPILERVLELNPDLNLENNDESIALIDQLNLSRWTFVNNTYPDEYAALHILSGISSNEWKNVENSNKLLARYYNVNGDEN KTSPWAKAALEETFKKFSNNNGPYDIILNPTYSEAYKRNVVMMIAWKKDGMGEAKIGAASSLAIEVVENKVKELKYGKKG YGMLIADDGTFISHPNQEYVMKENINTLEDKEMLKLSSTIKSQDKGIIKLGMGTGKKLAFYQKVPVTNWMVVNVVYESEL FSICTKLLILMIIIAILIIIVVILTIYKFSTNMLKPLTNISIFADEVAAGNLSANININSDDEFGKVAKALNNTAQYLKN YISEIDEVLGSISNGNINVNVEGEYKGDFVGIKESLIKIISSLNNTFTQIREATQQVSSGSQEVASVAQVLAQGASDQAS SIDELTASIGDINEQLKGTAEHANGTNKIVNQLVTYIEDSNKQMDGMLSAMSNIDVSSKNIQNIIKTIADIAEQTNLLAL NAAIEAARAGEAGKGFAVVADEVRMLAEQSSQAVKRTTELIENSIESVNEGKVIADNTASSLKEVVEHTKGATELVINIA NLAEEQSESLNKINERIEEIANVIQSNSSIAEESTAASEELTAQAESLDYMVAQFELKED
Specific function: May bind attractants or detect changes in the extracellular concentration of soluble sugars [H]
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1788194, Length=379, Percent_Identity=31.9261213720317, Blast_Score=158, Evalue=1e-39, Organism=Escherichia coli, GI1788195, Length=300, Percent_Identity=34.3333333333333, Blast_Score=150, Evalue=4e-37, Organism=Escherichia coli, GI1787690, Length=288, Percent_Identity=32.2916666666667, Blast_Score=145, Evalue=6e-36, Organism=Escherichia coli, GI2367378, Length=343, Percent_Identity=26.8221574344023, Blast_Score=135, Evalue=8e-33, Organism=Escherichia coli, GI1789453, Length=359, Percent_Identity=29.8050139275766, Blast_Score=132, Evalue=9e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal [H]
EC number: NA
Molecular weight: Translated: 76958; Mature: 76958
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: PS50885 HAMP ; PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNKIQVYFKKASVKSKLMLIIIPIVAFGLLLLTSITYGSAKNMIQKELVNLMSEREAEA CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VNNIDTWLNSRLSEVKEVAQSPILERVLELNPDLNLENNDESIALIDQLNLSRWTFVNNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEECCC YPDEYAALHILSGISSNEWKNVENSNKLLARYYNVNGDENKTSPWAKAALEETFKKFSNN CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCC NGPYDIILNPTYSEAYKRNVVMMIAWKKDGMGEAKIGAASSLAIEVVENKVKELKYGKKG CCCEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC YGMLIADDGTFISHPNQEYVMKENINTLEDKEMLKLSSTIKSQDKGIIKLGMGTGKKLAF CEEEEECCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE YQKVPVTNWMVVNVVYESELFSICTKLLILMIIIAILIIIVVILTIYKFSTNMLKPLTNI EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIFADEVAAGNLSANININSDDEFGKVAKALNNTAQYLKNYISEIDEVLGSISNGNINVN HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE VEGEYKGDFVGIKESLIKIISSLNNTFTQIREATQQVSSGSQEVASVAQVLAQGASDQAS EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH SIDELTASIGDINEQLKGTAEHANGTNKIVNQLVTYIEDSNKQMDGMLSAMSNIDVSSKN HHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHH IQNIIKTIADIAEQTNLLALNAAIEAARAGEAGKGFAVVADEVRMLAEQSSQAVKRTTEL HHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IENSIESVNEGKVIADNTASSLKEVVEHTKGATELVINIANLAEEQSESLNKINERIEEI HHHHHHHCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANVIQSNSSIAEESTAASEELTAQAESLDYMVAQFELKED HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC >Mature Secondary Structure MKNKIQVYFKKASVKSKLMLIIIPIVAFGLLLLTSITYGSAKNMIQKELVNLMSEREAEA CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH VNNIDTWLNSRLSEVKEVAQSPILERVLELNPDLNLENNDESIALIDQLNLSRWTFVNNT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEECCC YPDEYAALHILSGISSNEWKNVENSNKLLARYYNVNGDENKTSPWAKAALEETFKKFSNN CCHHHHHHHHHHCCCCCCCCCCCCCCHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHCCC NGPYDIILNPTYSEAYKRNVVMMIAWKKDGMGEAKIGAASSLAIEVVENKVKELKYGKKG CCCEEEEECCCHHHHHHCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC YGMLIADDGTFISHPNQEYVMKENINTLEDKEMLKLSSTIKSQDKGIIKLGMGTGKKLAF CEEEEECCCCEECCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCEEE YQKVPVTNWMVVNVVYESELFSICTKLLILMIIIAILIIIVVILTIYKFSTNMLKPLTNI EEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIFADEVAAGNLSANININSDDEFGKVAKALNNTAQYLKNYISEIDEVLGSISNGNINVN HHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEE VEGEYKGDFVGIKESLIKIISSLNNTFTQIREATQQVSSGSQEVASVAQVLAQGASDQAS EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHH SIDELTASIGDINEQLKGTAEHANGTNKIVNQLVTYIEDSNKQMDGMLSAMSNIDVSSKN HHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHH IQNIIKTIADIAEQTNLLALNAAIEAARAGEAGKGFAVVADEVRMLAEQSSQAVKRTTEL HHHHHHHHHHHHHHCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH IENSIESVNEGKVIADNTASSLKEVVEHTKGATELVINIANLAEEQSESLNKINERIEEI HHHHHHHCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANVIQSNSSIAEESTAASEELTAQAESLDYMVAQFELKED HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8436949 [H]