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The map label for this gene is yvoA [H]

Identifier: 187933736

GI number: 187933736

Start: 3240414

End: 3241139

Strand: Reverse

Name: yvoA [H]

Synonym: CLL_A3130

Alternate gene names: 187933736

Gene position: 3241139-3240414 (Counterclockwise)

Preceding gene: 187933169

Following gene: 187934791

Centisome position: 85.29

GC content: 24.1

Gene sequence:

>726_bases
ATGAATAAAATTGATAAAAGTTCTAAAATTCCATTATATGCACAATTAATGGATATTCTTATTAATCAAATAGAAAATTA
TATGGAAGAAAATGATCAATTAGATTCAGAAAGAGAAATTTGTGATAAATATGGCGTTAGTAGAACAACTGTAAGACAGG
CGTTGGATGAATTAGAAAAGCAAAAATATATATATAAAGTTCATGGAAAAGGAAATTTTATATCATCAAGAAGAGTCAAA
CAGGATTTAATAAAAGTTTATTCATTTACTGATGAAATGAGAAAACTTGGGAAAAAACCAATTTCAAAATTGTTAAATTT
CGAAATTGCAGAACCTGATAGTAAAATATTAAGAAAATTAAAGTTAAAAGAAAATGAGATTGTATATAAAATAACAAGAA
TAAGAATAGCTGACGATATTCCAATGATATATGAAGTAACATATTTACCATATGATAAGTTTAATGGTATAACTAAAAAA
GATTTAGAAGAAAATCCTATGTATGAAATTTTTAAGAATGATTTCAAAGTTCATATAACATCAGCTGAAGAAGTGCTTGA
AAGTATTTCTATAAATAAATTAGAAAGCATTTATTTAGATGTATCACAAGGAGAACCAGGGTTAAAAATTGAAAGAACAA
CATATGAAAATAAGCAAGTTATTGAATATACAGTAAGTATTGCAAGAGGAGATAAATTTAAATATAGAGTATGTCTAAAA
AATTAG

Upstream 100 bases:

>100_bases
TATATACAATTTTTAAAATATACTTAATAAATTCATATAATTAATAAGAATATGTTATAATTAGAAAAAATTAGCTTTAA
CTAGAAAGAGGTATATTCAC

Downstream 100 bases:

>100_bases
TAAAAATTCACATGTACTGGTAATTACAATATAGCCAGTAAGGGAGGGTATTATGATTTTTGGAAAAACTATTGAAGAGT
TAGAAAAATTAAAAGCAATA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MNKIDKSSKIPLYAQLMDILINQIENYMEENDQLDSEREICDKYGVSRTTVRQALDELEKQKYIYKVHGKGNFISSRRVK
QDLIKVYSFTDEMRKLGKKPISKLLNFEIAEPDSKILRKLKLKENEIVYKITRIRIADDIPMIYEVTYLPYDKFNGITKK
DLEENPMYEIFKNDFKVHITSAEEVLESISINKLESIYLDVSQGEPGLKIERTTYENKQVIEYTVSIARGDKFKYRVCLK
N

Sequences:

>Translated_241_residues
MNKIDKSSKIPLYAQLMDILINQIENYMEENDQLDSEREICDKYGVSRTTVRQALDELEKQKYIYKVHGKGNFISSRRVK
QDLIKVYSFTDEMRKLGKKPISKLLNFEIAEPDSKILRKLKLKENEIVYKITRIRIADDIPMIYEVTYLPYDKFNGITKK
DLEENPMYEIFKNDFKVHITSAEEVLESISINKLESIYLDVSQGEPGLKIERTTYENKQVIEYTVSIARGDKFKYRVCLK
N
>Mature_241_residues
MNKIDKSSKIPLYAQLMDILINQIENYMEENDQLDSEREICDKYGVSRTTVRQALDELEKQKYIYKVHGKGNFISSRRVK
QDLIKVYSFTDEMRKLGKKPISKLLNFEIAEPDSKILRKLKLKENEIVYKITRIRIADDIPMIYEVTYLPYDKFNGITKK
DLEENPMYEIFKNDFKVHITSAEEVLESISINKLESIYLDVSQGEPGLKIERTTYENKQVIEYTVSIARGDKFKYRVCLK
N

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=217, Percent_Identity=24.4239631336406, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1786950, Length=227, Percent_Identity=28.1938325991189, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1790118, Length=205, Percent_Identity=23.9024390243902, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788418, Length=238, Percent_Identity=22.2689075630252, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28419; Mature: 28419

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKIDKSSKIPLYAQLMDILINQIENYMEENDQLDSEREICDKYGVSRTTVRQALDELEK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
QKYIYKVHGKGNFISSRRVKQDLIKVYSFTDEMRKLGKKPISKLLNFEIAEPDSKILRKL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KLKENEIVYKITRIRIADDIPMIYEVTYLPYDKFNGITKKDLEENPMYEIFKNDFKVHIT
HCCCCCEEEEEEEEEEECCCCEEEEEEECCHHHHCCCCCCCCCCCCHHHHHCCCEEEEEE
SAEEVLESISINKLESIYLDVSQGEPGLKIERTTYENKQVIEYTVSIARGDKFKYRVCLK
CHHHHHHHHCHHHHHEEEEEECCCCCCCEEEECCCCCCEEEHEEEEHHCCCCEEEEEEEC
N
C
>Mature Secondary Structure
MNKIDKSSKIPLYAQLMDILINQIENYMEENDQLDSEREICDKYGVSRTTVRQALDELEK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
QKYIYKVHGKGNFISSRRVKQDLIKVYSFTDEMRKLGKKPISKLLNFEIAEPDSKILRKL
CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
KLKENEIVYKITRIRIADDIPMIYEVTYLPYDKFNGITKKDLEENPMYEIFKNDFKVHIT
HCCCCCEEEEEEEEEEECCCCEEEEEEECCHHHHCCCCCCCCCCCCHHHHHCCCEEEEEE
SAEEVLESISINKLESIYLDVSQGEPGLKIERTTYENKQVIEYTVSIARGDKFKYRVCLK
CHHHHHHHHCHHHHHEEEEEECCCCCCCEEEECCCCCCEEEHEEEEHHCCCCEEEEEEEC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]