| Definition | Clostridium botulinum B str. Eklund 17B, complete genome. |
|---|---|
| Accession | NC_010674 |
| Length | 3,800,327 |
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The map label for this gene is ydcP [H]
Identifier: 187932705
GI number: 187932705
Start: 2552300
End: 2554645
Strand: Reverse
Name: ydcP [H]
Synonym: CLL_A2464
Alternate gene names: 187932705
Gene position: 2554645-2552300 (Counterclockwise)
Preceding gene: 187933354
Following gene: 187935216
Centisome position: 67.22
GC content: 26.94
Gene sequence:
>2346_bases ATGAAAAAGATAGAACTATTAGCACCCGCAGGAAGTATGGAAAGCTTAATAGCAGCTATAAATAGAGGGGCAGATGCTAT TTATTTAGGAGGGAATAAGTTTTCGGCAAGAGCATATGCATCAAATTTTGATAATGAAATGATGATGAAAGCAGTAGACT ATGCACACAGTTATGGAGCTCGGGTATATGTAACTATAAATACTTTATTAAAAGAAAGTGAAATAAAAGAAGCATTAAAA TATGCAGGATACCTTTATGATATCGGAGTAGATGCTTTAATAATTCAAGACACTGGACTTATTAATTTAATACAAAACAC ATATTCAGACTTTGAATTACATGCATCAACTCAAATGACAGTACATAATGGTGAAGGTGCAATGTATTTTACTGAAAAAG GATTATCTAGAATCGTCTTATCTAGAGAACTTTCTTTAAATGAAATTAAATACATATCAAAAGATTTAGGTATAGAAACA GAAATATTTGTACATGGAGCACTTTGTGTATGTTATTCAGGGCAATGTTTAATGAGTTCTATGATAGGCGGAAGAAGTGG GAACAGAGGAAGATGCGCTCAACCTTGTAGAATGGAATATACAATAAAAGGTGAAAATACTGCACCTAAAAAAGCATATT TACTTAGTCCAAAAGATATGTGCTTAATTGATGATGTAGAAGAAATAATAAAAAGTGGAACAGCATCTTTAAAAGTAGAG GGAAGAATGAAGAGACCTGAGTATGTATCAGGCGTTGTAGATACTTATAGAAGAGCAATTGATAAGGTTATTTATAAACA AAAATTTGATTTAAAAAAGGGAAGAATTCAGTTAACCCAATTATTTAATAGAGAGGGTTTTTCCAAAGCATATTTATATA AAAACACAGGAAAAGACATGATGAGTTATAATTTCCCTAAAAACACTGGTATTCCTATAGGCAAAGCTGTTGATAAAAAT GAAATTATATTAGATGGAAATATAAGCATTGGAGATGGAATAAGATACAGAGATGAAGGATTTGTATTAGGTAAAATATT ACTTAATGGTAAAGAAGTAAAGGAAGCTTTTAAAGGTGATAAAGTTAAATTAATACCTGGTGGCTATAAAAAAGGTGATT TAATATACAGAATGTCTGATAAAAAATTATATGATGAATTAAAGGACTATGTAAAGTCATATAAAAGAAAAATATTATTA CAAGGTGAATTAGAATTTAAAGTTGGATTTCCTTTAAAACTTAAAACTAAATTTAATGGAAAAGAATATGAAGTTTTAGG TGATACAGTTGAGGTAGCGGAAAGATCACCATTAGATATAAAAAGAGTAGAAGAATGTTTAATGAAATCTGGAGAAATAC CATATAAGTTTGAAAAAGTATTGTTTAATATTTTTGAGGATGGATTTATAAGAATATCTTCATTAAACAATTTAAGAAGA GAGTTATTTGAAAAGATATTAAAAGAAGAAATATCTTCTTATAGACGAAGAAGATTTAAAAGTGATATTATAGAGAAAAA TTTAAAGACTGGTAAAAAACTAGGTTATATTTATAGCTGTATAAATAAAGAACAATTAAAAGCTTTATTAGAAGATGATT CTGTTAAAAATATAGCATTAGATATATCATATACTAAGCATAAGGGTGCATTAAATATAAGCGATTTTAAGAATGTAGAA AATAAAAATTTATATTTTATGACTCCTAATATAATAAAAGAAGAATTTAAAAATGTAGTTAACCAAATAGATGAAGCACT TCCATATATAGATGGATTAATAACATCTAATGTAGGCTTGATTAATTTGTATAAAGATAAATTATTTATAATAGGAGATT ACAAATTAAATCTTTTTAATAAAGAAGCATTGAACTTTTATAGAGAAGATATCGATATTCCTTCATTAAGCTTAGAGTTA AATAGAAAAGAAATTAAAGAAATAATGAAGAGTATTGATTATAATGTTGCAGTTGGGGTTTATGGAAAAACTGAATTGAT GATTAGTGAATATTGCCCAATTGGAAGTACCTTTGGAAATAAATCTAATTCAAAAGAGTGTAATGGCGCTTGCATGAGAG ATGAATTTACATTGGTAGATAGAAAAAATGAAACATTTAAAGTATTAGGTGATAATAGTTGTAGAAGCCATATATTAAAT TCACTTGCTTTAAATTTAATAGAAGAAATTGAAGAATTAAAAACATTTAATATATCTACGTTTAGAATTGACTTTAAAGA TGAAACTTATAATGAAGTTAAAGTGATATTAGAAGAAGTAAAAAAACTTAAAAAAAGTGAAAATAGAATCTATACTAAAG GTCATTATAAACGTGGTGTAGAGTAG
Upstream 100 bases:
>100_bases TATTGTCGTATAAACGAATTTTAATGCAACTACGCCATTATACTAAAATATTAACATTTATTTAAAATAAGGATAAGTAT AAACATTCAGGAGGAAATTA
Downstream 100 bases:
>100_bases AGGGGAACTATAAATGAACAAGAGATCTTTAAGAGTTTTAGAATTTAATAAAGTAAAGGAAATACTTAAAAAGTATGCAT ATAGCAGTTCTGCTAAGAAA
Product: peptidase, U32 family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 781; Mature: 781
Protein sequence:
>781_residues MKKIELLAPAGSMESLIAAINRGADAIYLGGNKFSARAYASNFDNEMMMKAVDYAHSYGARVYVTINTLLKESEIKEALK YAGYLYDIGVDALIIQDTGLINLIQNTYSDFELHASTQMTVHNGEGAMYFTEKGLSRIVLSRELSLNEIKYISKDLGIET EIFVHGALCVCYSGQCLMSSMIGGRSGNRGRCAQPCRMEYTIKGENTAPKKAYLLSPKDMCLIDDVEEIIKSGTASLKVE GRMKRPEYVSGVVDTYRRAIDKVIYKQKFDLKKGRIQLTQLFNREGFSKAYLYKNTGKDMMSYNFPKNTGIPIGKAVDKN EIILDGNISIGDGIRYRDEGFVLGKILLNGKEVKEAFKGDKVKLIPGGYKKGDLIYRMSDKKLYDELKDYVKSYKRKILL QGELEFKVGFPLKLKTKFNGKEYEVLGDTVEVAERSPLDIKRVEECLMKSGEIPYKFEKVLFNIFEDGFIRISSLNNLRR ELFEKILKEEISSYRRRRFKSDIIEKNLKTGKKLGYIYSCINKEQLKALLEDDSVKNIALDISYTKHKGALNISDFKNVE NKNLYFMTPNIIKEEFKNVVNQIDEALPYIDGLITSNVGLINLYKDKLFIIGDYKLNLFNKEALNFYREDIDIPSLSLEL NRKEIKEIMKSIDYNVAVGVYGKTELMISEYCPIGSTFGNKSNSKECNGACMRDEFTLVDRKNETFKVLGDNSCRSHILN SLALNLIEEIEELKTFNISTFRIDFKDETYNEVKVILEEVKKLKKSENRIYTKGHYKRGVE
Sequences:
>Translated_781_residues MKKIELLAPAGSMESLIAAINRGADAIYLGGNKFSARAYASNFDNEMMMKAVDYAHSYGARVYVTINTLLKESEIKEALK YAGYLYDIGVDALIIQDTGLINLIQNTYSDFELHASTQMTVHNGEGAMYFTEKGLSRIVLSRELSLNEIKYISKDLGIET EIFVHGALCVCYSGQCLMSSMIGGRSGNRGRCAQPCRMEYTIKGENTAPKKAYLLSPKDMCLIDDVEEIIKSGTASLKVE GRMKRPEYVSGVVDTYRRAIDKVIYKQKFDLKKGRIQLTQLFNREGFSKAYLYKNTGKDMMSYNFPKNTGIPIGKAVDKN EIILDGNISIGDGIRYRDEGFVLGKILLNGKEVKEAFKGDKVKLIPGGYKKGDLIYRMSDKKLYDELKDYVKSYKRKILL QGELEFKVGFPLKLKTKFNGKEYEVLGDTVEVAERSPLDIKRVEECLMKSGEIPYKFEKVLFNIFEDGFIRISSLNNLRR ELFEKILKEEISSYRRRRFKSDIIEKNLKTGKKLGYIYSCINKEQLKALLEDDSVKNIALDISYTKHKGALNISDFKNVE NKNLYFMTPNIIKEEFKNVVNQIDEALPYIDGLITSNVGLINLYKDKLFIIGDYKLNLFNKEALNFYREDIDIPSLSLEL NRKEIKEIMKSIDYNVAVGVYGKTELMISEYCPIGSTFGNKSNSKECNGACMRDEFTLVDRKNETFKVLGDNSCRSHILN SLALNLIEEIEELKTFNISTFRIDFKDETYNEVKVILEEVKKLKKSENRIYTKGHYKRGVE >Mature_781_residues MKKIELLAPAGSMESLIAAINRGADAIYLGGNKFSARAYASNFDNEMMMKAVDYAHSYGARVYVTINTLLKESEIKEALK YAGYLYDIGVDALIIQDTGLINLIQNTYSDFELHASTQMTVHNGEGAMYFTEKGLSRIVLSRELSLNEIKYISKDLGIET EIFVHGALCVCYSGQCLMSSMIGGRSGNRGRCAQPCRMEYTIKGENTAPKKAYLLSPKDMCLIDDVEEIIKSGTASLKVE GRMKRPEYVSGVVDTYRRAIDKVIYKQKFDLKKGRIQLTQLFNREGFSKAYLYKNTGKDMMSYNFPKNTGIPIGKAVDKN EIILDGNISIGDGIRYRDEGFVLGKILLNGKEVKEAFKGDKVKLIPGGYKKGDLIYRMSDKKLYDELKDYVKSYKRKILL QGELEFKVGFPLKLKTKFNGKEYEVLGDTVEVAERSPLDIKRVEECLMKSGEIPYKFEKVLFNIFEDGFIRISSLNNLRR ELFEKILKEEISSYRRRRFKSDIIEKNLKTGKKLGYIYSCINKEQLKALLEDDSVKNIALDISYTKHKGALNISDFKNVE NKNLYFMTPNIIKEEFKNVVNQIDEALPYIDGLITSNVGLINLYKDKLFIIGDYKLNLFNKEALNFYREDIDIPSLSLEL NRKEIKEIMKSIDYNVAVGVYGKTELMISEYCPIGSTFGNKSNSKECNGACMRDEFTLVDRKNETFKVLGDNSCRSHILN SLALNLIEEIEELKTFNISTFRIDFKDETYNEVKVILEEVKKLKKSENRIYTKGHYKRGVE
Specific function: Unknown
COG id: COG0826
COG function: function code O; Collagenase and related proteases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U32 family [H]
Homologues:
Organism=Escherichia coli, GI87081910, Length=513, Percent_Identity=30.7992202729045, Blast_Score=223, Evalue=3e-59, Organism=Escherichia coli, GI1788397, Length=354, Percent_Identity=30.5084745762712, Blast_Score=171, Evalue=2e-43, Organism=Escherichia coli, GI1789548, Length=294, Percent_Identity=30.2721088435374, Blast_Score=137, Evalue=3e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020988 - InterPro: IPR001539 [H]
Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]
EC number: 3.4.-.- [C]
Molecular weight: Translated: 89193; Mature: 89193
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS01276 PEPTIDASE_U32
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKIELLAPAGSMESLIAAINRGADAIYLGGNKFSARAYASNFDNEMMMKAVDYAHSYGA CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHCCC RVYVTINTLLKESEIKEALKYAGYLYDIGVDALIIQDTGLINLIQNTYSDFELHASTQMT EEEEEHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHHCCCCEEEEECEEEE VHNGEGAMYFTEKGLSRIVLSRELSLNEIKYISKDLGIETEIFVHGALCVCYSGQCLMSS EECCCCEEEEEHHCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHHHHH MIGGRSGNRGRCAQPCRMEYTIKGENTAPKKAYLLSPKDMCLIDDVEEIIKSGTASLKVE HHCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCEEHHHHHHHHHCCCCEEEEE GRMKRPEYVSGVVDTYRRAIDKVIYKQKFDLKKGRIQLTQLFNREGFSKAYLYKNTGKDM CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHH MSYNFPKNTGIPIGKAVDKNEIILDGNISIGDGIRYRDEGFVLGKILLNGKEVKEAFKGD HEECCCCCCCCCCCCCCCCCCEEEECCEEECCCCEECCCCEEEEEEEECCHHHHHHHCCC KVKLIPGGYKKGDLIYRMSDKKLYDELKDYVKSYKRKILLQGELEFKVGFPLKLKTKFNG EEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEECCCC KEYEVLGDTVEVAERSPLDIKRVEECLMKSGEIPYKFEKVLFNIFEDGFIRISSLNNLRR CEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHH ELFEKILKEEISSYRRRRFKSDIIEKNLKTGKKLGYIYSCINKEQLKALLEDDSVKNIAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEE DISYTKHKGALNISDFKNVENKNLYFMTPNIIKEEFKNVVNQIDEALPYIDGLITSNVGL EEEEECCCCCEEHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE INLYKDKLFIIGDYKLNLFNKEALNFYREDIDIPSLSLELNRKEIKEIMKSIDYNVAVGV EEEEECEEEEEEEEEEEEECHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEEEE YGKTELMISEYCPIGSTFGNKSNSKECNGACMRDEFTLVDRKNETFKVLGDNSCRSHILN CCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCEEEEECCCHHHHHHHH SLALNLIEEIEELKTFNISTFRIDFKDETYNEVKVILEEVKKLKKSENRIYTKGHYKRGV HHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC E C >Mature Secondary Structure MKKIELLAPAGSMESLIAAINRGADAIYLGGNKFSARAYASNFDNEMMMKAVDYAHSYGA CCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCEECHHHHCCCCHHHHHHHHHHHHHCCC RVYVTINTLLKESEIKEALKYAGYLYDIGVDALIIQDTGLINLIQNTYSDFELHASTQMT EEEEEHHHHHHHHHHHHHHHHCCEEEECCCCEEEEECCCHHHHHHHCCCCEEEEECEEEE VHNGEGAMYFTEKGLSRIVLSRELSLNEIKYISKDLGIETEIFVHGALCVCYSGQCLMSS EECCCCEEEEEHHCHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEEEEEEEEECCHHHHHH MIGGRSGNRGRCAQPCRMEYTIKGENTAPKKAYLLSPKDMCLIDDVEEIIKSGTASLKVE HHCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEECCCCCEEHHHHHHHHHCCCCEEEEE GRMKRPEYVSGVVDTYRRAIDKVIYKQKFDLKKGRIQLTQLFNREGFSKAYLYKNTGKDM CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHH MSYNFPKNTGIPIGKAVDKNEIILDGNISIGDGIRYRDEGFVLGKILLNGKEVKEAFKGD HEECCCCCCCCCCCCCCCCCCEEEECCEEECCCCEECCCCEEEEEEEECCHHHHHHHCCC KVKLIPGGYKKGDLIYRMSDKKLYDELKDYVKSYKRKILLQGELEFKVGFPLKLKTKFNG EEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHEEEEEEEEEEEECCCEEEEECCCC KEYEVLGDTVEVAERSPLDIKRVEECLMKSGEIPYKFEKVLFNIFEDGFIRISSLNNLRR CEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHH ELFEKILKEEISSYRRRRFKSDIIEKNLKTGKKLGYIYSCINKEQLKALLEDDSVKNIAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCEEEE DISYTKHKGALNISDFKNVENKNLYFMTPNIIKEEFKNVVNQIDEALPYIDGLITSNVGL EEEEECCCCCEEHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE INLYKDKLFIIGDYKLNLFNKEALNFYREDIDIPSLSLELNRKEIKEIMKSIDYNVAVGV EEEEECEEEEEEEEEEEEECHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHCCCEEEEEE YGKTELMISEYCPIGSTFGNKSNSKECNGACMRDEFTLVDRKNETFKVLGDNSCRSHILN CCCEEEEEECCCCCCCCCCCCCCCCCCCCCEECCCEEEEECCCCEEEEECCCHHHHHHHH SLALNLIEEIEELKTFNISTFRIDFKDETYNEVKVILEEVKKLKKSENRIYTKGHYKRGV HHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEECCCCCCCC E C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]