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The map label for this gene is hupC [H]

Identifier: 187736608

GI number: 187736608

Start: 2597694

End: 2598866

Strand: Direct

Name: hupC [H]

Synonym: Amuc_2130

Alternate gene names: 187736608

Gene position: 2597694-2598866 (Clockwise)

Preceding gene: 187736607

Following gene: 187736609

Centisome position: 97.51

GC content: 61.13

Gene sequence:

>1173_bases
GTGAAAACGACTCTTATCGATAACGACCTCACCCTGGCGGTGGAGGATGCCATTCCGGCCAGTCCGGTGTACGCTCCGGA
AGAAATCCTGGCTCTGGCCGTGTGCGCCTCCCCCAACGGCAGCAGGGACGCGGGAGACCTGGCCCTGCTCCATGCCGCGC
GGGAACGCGGCATAACCCTCCCTTACGCCCAGCGGGAAAACTCCTGGGAGGCTCCCTCCCGGGAAAGGCCGTACAGCACG
GCTGTTCTGAAAGCCGCAGACAAGGCGGACGCCTCCCCTTTCATGGTAGCCCGCGGCAATCTGAAGGCGCTGGAAAAACT
GTGCGAAGTCAGCTCCCTGGAAAAGGAGCGCATGAACAAGGCCTTTGAAGAGCATTCCCCCTCCGGCTTTGAACCCGTGG
CCGTGGCCGTCCACCGGTCCGGCGCGCCGTGGCGCCTGTTGGGCGTCGTGCCCATGCACGCCATGAGGGATGTGCGCCGC
CTCTCCATGGCCAAGGCCAATTTCCGCTATTTCCACGTCTGGGACTGGCCTCTGCGCGTGCTGCACTGGACGTGGGTGCT
CTGCATCATCGGCCTGTCCGCCACAGGCATCTGCATCGCGGAAGGGTGGTTCCTGAAAATGGGGGATCTGCACGGGGCTT
TCCAATTCGGAACGCTCCGCTTCGTGCATTACGCGCTGGGGTGGATTCTGGTGGTGGTGATGATGCTGCGTTTTTCCTGC
TTTTTCATGGCCTCCAACAAATACCAGAGTTTCCGGGCCCTGTTCCCCGTTTCCAGACAGGAGTGGAAGGATTTGTACGC
CACAGCGGTGGACTACCTGTTCGCCCGCAGTTATGACGGCCCCCGCTACATCGGCCACAATCCCCTGCAGCAGTGGACAT
ACACGGGCGTGTACGTCCTGTTCACCACCATGGTGGTGACCGGGCTGGCCCTGTATGCCCTGTATGAGCCGCGCCACTGG
TTCTACCGCTGGTTCATGCCGCTGAACGACCTGATAGGCATTCCGTACGTGCGCCTGGTGCATTTGATCGGCATGTGGTG
CTTCATCATCTTCGCCATGATCCACGTGTACCTTTCCATCCTTTCCGGGAACGTGGACCGGGACGGCACCATCTCCTCCA
TGTTCAGCGGCGGACGATGGCTGCGCAAGGGCGTCAAATTCCGGGATGAATAA

Upstream 100 bases:

>100_bases
TGGAGCCCCTGCGCACCATTCACAGCTATGACCCGTGCCAATCCTGCGCCGTCCATTTGTTTGACGAAGAAGGGGAGGCC
ATTCTGACCAGACAGGACCC

Downstream 100 bases:

>100_bases
CCTCTCCGCCCTCCCCTTGACATGAAATTGGAGCCATACACGGAAGAACTGCGGGGCTGCCCCGTGAAGGGAAATGCCTA
TCCCGTGCTCGTGCTGGGCA

Product: cytochrome B561

Products: oxidized ferredoxin; H2 [C]

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKTTLIDNDLTLAVEDAIPASPVYAPEEILALAVCASPNGSRDAGDLALLHAARERGITLPYAQRENSWEAPSRERPYST
AVLKAADKADASPFMVARGNLKALEKLCEVSSLEKERMNKAFEEHSPSGFEPVAVAVHRSGAPWRLLGVVPMHAMRDVRR
LSMAKANFRYFHVWDWPLRVLHWTWVLCIIGLSATGICIAEGWFLKMGDLHGAFQFGTLRFVHYALGWILVVVMMLRFSC
FFMASNKYQSFRALFPVSRQEWKDLYATAVDYLFARSYDGPRYIGHNPLQQWTYTGVYVLFTTMVVTGLALYALYEPRHW
FYRWFMPLNDLIGIPYVRLVHLIGMWCFIIFAMIHVYLSILSGNVDRDGTISSMFSGGRWLRKGVKFRDE

Sequences:

>Translated_390_residues
MKTTLIDNDLTLAVEDAIPASPVYAPEEILALAVCASPNGSRDAGDLALLHAARERGITLPYAQRENSWEAPSRERPYST
AVLKAADKADASPFMVARGNLKALEKLCEVSSLEKERMNKAFEEHSPSGFEPVAVAVHRSGAPWRLLGVVPMHAMRDVRR
LSMAKANFRYFHVWDWPLRVLHWTWVLCIIGLSATGICIAEGWFLKMGDLHGAFQFGTLRFVHYALGWILVVVMMLRFSC
FFMASNKYQSFRALFPVSRQEWKDLYATAVDYLFARSYDGPRYIGHNPLQQWTYTGVYVLFTTMVVTGLALYALYEPRHW
FYRWFMPLNDLIGIPYVRLVHLIGMWCFIIFAMIHVYLSILSGNVDRDGTISSMFSGGRWLRKGVKFRDE
>Mature_390_residues
MKTTLIDNDLTLAVEDAIPASPVYAPEEILALAVCASPNGSRDAGDLALLHAARERGITLPYAQRENSWEAPSRERPYST
AVLKAADKADASPFMVARGNLKALEKLCEVSSLEKERMNKAFEEHSPSGFEPVAVAVHRSGAPWRLLGVVPMHAMRDVRR
LSMAKANFRYFHVWDWPLRVLHWTWVLCIIGLSATGICIAEGWFLKMGDLHGAFQFGTLRFVHYALGWILVVVMMLRFSC
FFMASNKYQSFRALFPVSRQEWKDLYATAVDYLFARSYDGPRYIGHNPLQQWTYTGVYVLFTTMVVTGLALYALYEPRHW
FYRWFMPLNDLIGIPYVRLVHLIGMWCFIIFAMIHVYLSILSGNVDRDGTISSMFSGGRWLRKGVKFRDE

Specific function: B-type cytochrome involved in electron transfer from hydrogenase to oxygen [H]

COG id: COG1969

COG function: function code C; Ni,Fe-hydrogenase I cytochrome b subunit

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupC/hyaC/hydC family [H]

Homologues:

Organism=Escherichia coli, GI1787208, Length=217, Percent_Identity=29.0322580645161, Blast_Score=82, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005797
- InterPro:   IPR016174
- InterPro:   IPR000516 [H]

Pfam domain/function: PF00033 Cytochrom_B_N [H]

EC number: NA

Molecular weight: Translated: 44513; Mature: 44513

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTTLIDNDLTLAVEDAIPASPVYAPEEILALAVCASPNGSRDAGDLALLHAARERGITL
CCCEEECCCCEEEEECCCCCCCCCCHHHHHEEHEECCCCCCCCCHHHHHHHHHHHCCCCC
PYAQRENSWEAPSRERPYSTAVLKAADKADASPFMVARGNLKALEKLCEVSSLEKERMNK
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
AFEEHSPSGFEPVAVAVHRSGAPWRLLGVVPMHAMRDVRRLSMAKANFRYFHVWDWPLRV
HHHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
LHWTWVLCIIGLSATGICIAEGWFLKMGDLHGAFQFGTLRFVHYALGWILVVVMMLRFSC
HHHHHHHHHHHCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFMASNKYQSFRALFPVSRQEWKDLYATAVDYLFARSYDGPRYIGHNPLQQWTYTGVYVL
HHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
FTTMVVTGLALYALYEPRHWFYRWFMPLNDLIGIPYVRLVHLIGMWCFIIFAMIHVYLSI
HHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGNVDRDGTISSMFSGGRWLRKGVKFRDE
HHCCCCCCCCHHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure
MKTTLIDNDLTLAVEDAIPASPVYAPEEILALAVCASPNGSRDAGDLALLHAARERGITL
CCCEEECCCCEEEEECCCCCCCCCCHHHHHEEHEECCCCCCCCCHHHHHHHHHHHCCCCC
PYAQRENSWEAPSRERPYSTAVLKAADKADASPFMVARGNLKALEKLCEVSSLEKERMNK
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHH
AFEEHSPSGFEPVAVAVHRSGAPWRLLGVVPMHAMRDVRRLSMAKANFRYFHVWDWPLRV
HHHHCCCCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHH
LHWTWVLCIIGLSATGICIAEGWFLKMGDLHGAFQFGTLRFVHYALGWILVVVMMLRFSC
HHHHHHHHHHHCCCCCEEEECCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFMASNKYQSFRALFPVSRQEWKDLYATAVDYLFARSYDGPRYIGHNPLQQWTYTGVYVL
HHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
FTTMVVTGLALYALYEPRHWFYRWFMPLNDLIGIPYVRLVHLIGMWCFIIFAMIHVYLSI
HHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LSGNVDRDGTISSMFSGGRWLRKGVKFRDE
HHCCCCCCCCHHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Reduced ferredoxin; 2 H+ [C]

Specific reaction: Reduced ferredoxin + 2 H+ = 2 oxidized ferredoxin + H2 [C]

General reaction: Oxidoreductases [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8230232; 8163174; 12597275; 3054886 [H]