| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187736601
Identifier: 187736601
GI number: 187736601
Start: 2586960
End: 2588510
Strand: Direct
Name: 187736601
Synonym: Amuc_2123
Alternate gene names: NA
Gene position: 2586960-2588510 (Clockwise)
Preceding gene: 187736600
Following gene: 187736602
Centisome position: 97.1
GC content: 59.06
Gene sequence:
>1551_bases ATGCCTTCCCCATCCCAGGACACGGTAGCCTGCACTTGCCCGTCATGCGGCAACCTCTTTGCCGTGAAGGCGTCTTTTCT GGGACGCCAGGTAAAATGCCCCATCTGCACCGCTTCAGTCACAGCCAGGCAGGAAGCAAAGCCCAGGCCGGAAACGGAAA AACAGGACGCCGCCCCCTGCCTCTGCCATGTTTGCGGCAATCCCTTTGCCGTCAGGGCCGCCTGCGTAGGCAGCCGTGTG GAATGCCCCGTCTGCCACTCCACCGTCACGGCCGTCAAACGGGAAGAAGCACTTTCAACATTCCCGGGCCGGACGCCTGA AGTTGCAAAGAAAGCGCCCGGAAATCCGAAACAACCGGCTATTCCGTCATCTGCCGCCGGTGTTCCGCACACTTCCGCGT ACTCCGCTCCGCATACACCGCTCGCACCAAAGAAAAAGACGGACAGACGGACCATTTCCGTTCACGGGCCTACCACTCCG GGCCCCAATAAATCCACGACAAAAATCCGTAAAAGGAAAGAGGGAAACGCCGCTCCGGCCATTGCCGCGCCACGCTGCGC CGCCCTGGCCCCGGAAGAACCGGAATACCGCACTGCCGCCGCGGACCCCATGCGCAGCGAACGCCGGCCCACTTGGCATA TATGGCTTTTTGTCGCGGGACTGGTTCTTTCCCTTCTGGGCGTGTTCATGTTCCTGCGCGGGAGGGATATGGAAGCGGAA AACTCCAAACTTCTGAATATCTCAGACCGGTTCGTGGATCATGAAGCGCTCTTTTCACAGGAAGTGAATAAAGACCTGCT GGAGCAATTGCAGCAGAGGGAGCGGCAATACCGGCTCATAGCCCACAGCCGCAGGGAGGAAGACCGGAAGGCGGAATCCA TTTCCCCCCATATCACGGCGGCCATGAATGAACTGGCCCTTTACTGCATGGCGGAATCGGATGAAGAGAGGCTCAACTAC GTGATGAATCCCGCAGCCGTAGCTCCCAAAATGGCCTCTTGGGCCTCCTACGGCCAATACAAGGACTACCTGCCCCAGGA AGCGGGCAGAAGCTCCAAAAACGGGGACCTGCTCCAAATCACCGTGCTGATGGACGACAACACTATCCGCCCGGCGGTTT TCCTGTATGACCGGAATTCAGGAAAATGGAAGCTGGACTGGGAAGCCTGGGAGGGCTATTCCCCCATGCTTCCGGCGGAG CTGGAAGCCAAAAAGCCCTCCACCCCCGTTCCCGTCAGAATCATCCTAAGCATGTCCGGCATTTATCAGCCCCCTTTCCT GGAGGAATCCTCCGCGGAAAGCTACCGCAACACGTCATATCTCAACTTCACCCTTGAGTTCCCCAACGGGGAACGCCTGA ATGCGTACGTGGACAGGTATTCCCCGCTGGCCCTGGAACTGACCAGGCTGCTTTACAACGGCCCCGTGCGCACCTGCGTG CTCATCCGCTATCCGGAAGACCTGCCCGGCAACCGGGCCGTTATTATTGACCAGCTTCTGCACTCCGGCTGGATGAGCGA CGCCACCCGCAGGCTTCTTCCCCCCCAATAA
Upstream 100 bases:
>100_bases CGTTTCTTCAGACCATACGGATACAAGCATTACGTTGCCGGCACCCAGGCCCATCACCATTCCCGTGCCGGAATTCATCC ACCTGTAACTTCTTCACCTC
Downstream 100 bases:
>100_bases TTGAAAATCAAGAATCGGTTCCCGCTTTCCATGAGTTCCAAAGCACTAGCGCAAACACAGGACAAAGCCCTCCAACTCAA CCTGGCTTCCACCATTTACG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 516; Mature: 515
Protein sequence:
>516_residues MPSPSQDTVACTCPSCGNLFAVKASFLGRQVKCPICTASVTARQEAKPRPETEKQDAAPCLCHVCGNPFAVRAACVGSRV ECPVCHSTVTAVKREEALSTFPGRTPEVAKKAPGNPKQPAIPSSAAGVPHTSAYSAPHTPLAPKKKTDRRTISVHGPTTP GPNKSTTKIRKRKEGNAAPAIAAPRCAALAPEEPEYRTAAADPMRSERRPTWHIWLFVAGLVLSLLGVFMFLRGRDMEAE NSKLLNISDRFVDHEALFSQEVNKDLLEQLQQRERQYRLIAHSRREEDRKAESISPHITAAMNELALYCMAESDEERLNY VMNPAAVAPKMASWASYGQYKDYLPQEAGRSSKNGDLLQITVLMDDNTIRPAVFLYDRNSGKWKLDWEAWEGYSPMLPAE LEAKKPSTPVPVRIILSMSGIYQPPFLEESSAESYRNTSYLNFTLEFPNGERLNAYVDRYSPLALELTRLLYNGPVRTCV LIRYPEDLPGNRAVIIDQLLHSGWMSDATRRLLPPQ
Sequences:
>Translated_516_residues MPSPSQDTVACTCPSCGNLFAVKASFLGRQVKCPICTASVTARQEAKPRPETEKQDAAPCLCHVCGNPFAVRAACVGSRV ECPVCHSTVTAVKREEALSTFPGRTPEVAKKAPGNPKQPAIPSSAAGVPHTSAYSAPHTPLAPKKKTDRRTISVHGPTTP GPNKSTTKIRKRKEGNAAPAIAAPRCAALAPEEPEYRTAAADPMRSERRPTWHIWLFVAGLVLSLLGVFMFLRGRDMEAE NSKLLNISDRFVDHEALFSQEVNKDLLEQLQQRERQYRLIAHSRREEDRKAESISPHITAAMNELALYCMAESDEERLNY VMNPAAVAPKMASWASYGQYKDYLPQEAGRSSKNGDLLQITVLMDDNTIRPAVFLYDRNSGKWKLDWEAWEGYSPMLPAE LEAKKPSTPVPVRIILSMSGIYQPPFLEESSAESYRNTSYLNFTLEFPNGERLNAYVDRYSPLALELTRLLYNGPVRTCV LIRYPEDLPGNRAVIIDQLLHSGWMSDATRRLLPPQ >Mature_515_residues PSPSQDTVACTCPSCGNLFAVKASFLGRQVKCPICTASVTARQEAKPRPETEKQDAAPCLCHVCGNPFAVRAACVGSRVE CPVCHSTVTAVKREEALSTFPGRTPEVAKKAPGNPKQPAIPSSAAGVPHTSAYSAPHTPLAPKKKTDRRTISVHGPTTPG PNKSTTKIRKRKEGNAAPAIAAPRCAALAPEEPEYRTAAADPMRSERRPTWHIWLFVAGLVLSLLGVFMFLRGRDMEAEN SKLLNISDRFVDHEALFSQEVNKDLLEQLQQRERQYRLIAHSRREEDRKAESISPHITAAMNELALYCMAESDEERLNYV MNPAAVAPKMASWASYGQYKDYLPQEAGRSSKNGDLLQITVLMDDNTIRPAVFLYDRNSGKWKLDWEAWEGYSPMLPAEL EAKKPSTPVPVRIILSMSGIYQPPFLEESSAESYRNTSYLNFTLEFPNGERLNAYVDRYSPLALELTRLLYNGPVRTCVL IRYPEDLPGNRAVIIDQLLHSGWMSDATRRLLPPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57307; Mature: 57176
Theoretical pI: Translated: 8.41; Mature: 8.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.7 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSPSQDTVACTCPSCGNLFAVKASFLGRQVKCPICTASVTARQEAKPRPETEKQDAAPC CCCCCCCCEEEECCCCCCEEEEEHHHCCCEEECCEEECCHHHHHCCCCCCCCCCCCCCHH LCHVCGNPFAVRAACVGSRVECPVCHSTVTAVKREEALSTFPGRTPEVAKKAPGNPKQPA HHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC IPSSAAGVPHTSAYSAPHTPLAPKKKTDRRTISVHGPTTPGPNKSTTKIRKRKEGNAAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCC IAAPRCAALAPEEPEYRTAAADPMRSERRPTWHIWLFVAGLVLSLLGVFMFLRGRDMEAE CCCCCHHCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC NSKLLNISDRFVDHEALFSQEVNKDLLEQLQQRERQYRLIAHSRREEDRKAESISPHITA CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AMNELALYCMAESDEERLNYVMNPAAVAPKMASWASYGQYKDYLPQEAGRSSKNGDLLQI HHHHHEEEEECCCCHHHHHHHCCCHHHCCHHHHHHHCCCHHHHCCHHHCCCCCCCCEEEE TVLMDDNTIRPAVFLYDRNSGKWKLDWEAWEGYSPMLPAELEAKKPSTPVPVRIILSMSG EEEECCCCCCCEEEEEECCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC IYQPPFLEESSAESYRNTSYLNFTLEFPNGERLNAYVDRYSPLALELTRLLYNGPVRTCV CCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEE LIRYPEDLPGNRAVIIDQLLHSGWMSDATRRLLPPQ EEECCCCCCCCCEEHHHHHHHCCHHHHHHHHCCCCC >Mature Secondary Structure PSPSQDTVACTCPSCGNLFAVKASFLGRQVKCPICTASVTARQEAKPRPETEKQDAAPC CCCCCCCEEEECCCCCCEEEEEHHHCCCEEECCEEECCHHHHHCCCCCCCCCCCCCCHH LCHVCGNPFAVRAACVGSRVECPVCHSTVTAVKREEALSTFPGRTPEVAKKAPGNPKQPA HHHHCCCCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCC IPSSAAGVPHTSAYSAPHTPLAPKKKTDRRTISVHGPTTPGPNKSTTKIRKRKEGNAAPA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHCCCCCCCC IAAPRCAALAPEEPEYRTAAADPMRSERRPTWHIWLFVAGLVLSLLGVFMFLRGRDMEAE CCCCCHHCCCCCCCCCCCCCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCC NSKLLNISDRFVDHEALFSQEVNKDLLEQLQQRERQYRLIAHSRREEDRKAESISPHITA CCEEEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AMNELALYCMAESDEERLNYVMNPAAVAPKMASWASYGQYKDYLPQEAGRSSKNGDLLQI HHHHHEEEEECCCCHHHHHHHCCCHHHCCHHHHHHHCCCHHHHCCHHHCCCCCCCCEEEE TVLMDDNTIRPAVFLYDRNSGKWKLDWEAWEGYSPMLPAELEAKKPSTPVPVRIILSMSG EEEECCCCCCCEEEEEECCCCCEEEEHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC IYQPPFLEESSAESYRNTSYLNFTLEFPNGERLNAYVDRYSPLALELTRLLYNGPVRTCV CCCCCCCCCCCHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHHHHHHHHHCCCCEEEE LIRYPEDLPGNRAVIIDQLLHSGWMSDATRRLLPPQ EEECCCCCCCCCEEHHHHHHHCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA