| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is pbpG [H]
Identifier: 187736600
GI number: 187736600
Start: 2584458
End: 2586947
Strand: Direct
Name: pbpG [H]
Synonym: Amuc_2122
Alternate gene names: 187736600
Gene position: 2584458-2586947 (Clockwise)
Preceding gene: 187736599
Following gene: 187736601
Centisome position: 97.01
GC content: 58.27
Gene sequence:
>2490_bases ATGCAGGCCAACAAAAGGCGGCATCCCAAGGCAAAGCCCAGGAAACGATTCTGGAGCTTTATCCGAAAGCTTGTCCTGTG GTGCCTGGTGATGGCGGCTATCGGCGCGGCCGTGGGATACTTCGGATTCATGATGGCCTGGAAACGTTATAACAACTGGG CGGCGGAATTTGATCTGGAACGCATCAATGACCTGGAAAAACCCAGCATTATTTATGACCGGAACGGGGAGGAAATAGGC CGTATTTATGTGGAGAACCGCAGCTACGTCACGCTGGACAAAATCTCCCCCGCCATGATTAACGCGCTGATTGCCCAGGA AGATTCCCGCTTCCGGGAACATCCGGGCTATGACTTCCTGGGGATTCTGCGGGCAGGCCGGGAGTATATCCACAACAGCG GGGACGCCAACCAGGGCGCCTCCTCCATCACCCAGCAGCTTGCCAGAAATGCGTATGACCTGAAAAACCGTGCCAAAGCC AGGAATGAGGGCAGCTTTGGCCGCAAATTCGTGGAAATAGCGCTGGCGCGCCGCATTACGGAACGGTACAGCAAGGACCA GGTTCTGGAATTTTACCTGAACCGCGTTTACTTCGGCAGCGGGTTTTACGGCATCCGGGCCGCTTCCCTGGGCTACTTCG GCAAAGAGCCGGCGGACCTGACCACCCGGGAGGCCGCCTCCATCGCCGCCCTGATCAAAAACCCGAACGGACTTTCCCCT CTGAATAATCCGGCTAGCAATCTGAAATGGCGCAACCACGTTCTCAACCGCATGGCCAAGGAGAAATACATTACGCCGGA TGAAGCGGAACGCCTCTCCGCCATGGAGCTGGGGCTGAATCCCAAGCCGCTGAAACGCGGCGTCTCCCACATTTACGACC GCATTTCCTCAGAAATCACCGCATACCTGGGAGAGGAGCGCGTCAATGCCGCCGGGCTTAAAATTTACACCACCATTGAC AGGCAGCTCCAGGAAGTTACCGGAAAAGCCCTGGAACAGGCTCTGGAAAACATTGAAAAACAACCCGGTTACCGTCATCA GAAGGCCGCAGACTACCACAGCGGTTCCGCGAACAAGCCGCGCTATCTGGAAGGAGCGCTGCTGGTGGTGGACAACAAAT CAGGCGCCGTCCTGGCCTACCACGGAGGCAGGGATTACACCAAGCGCCAGTATGACGCCATCAGGGACGGAGCCCGCCCC ACCGGCACCGCCATCCTCCCTTTCCTGTACGCCACAGCCTTTGACACGGGAAAAAGCCCCGTCACCCGCATTCTGGACGA TGCCATCGACAACCGCCTGACGGGCATCGGTGGTTCGGAAGGAATCCTGGGGGAATGGGGGGCGGAAAACTCCAAAAACC GTTATGAAGGCATGATTACCGCCCATCGCGGCCTGTCTGCCTCCAAAATCGCCGCCTCCCTGCGCATGGGGATGGAGATG GGCACGGCCCCGTTCGTCAAGAAGCTGACGGATTTCGGCATCCGCAAGCCCGTGAGGGAAGCGGGCAGCACGGAAGTAAA CCCCGTTTACCGCCCCAAAATTTTCGTGGGCACGGAACCTGCCTCCCTGAAGGAAATGACGCTGGCCTACACCGCCATCC CGAACGGGGGTTCCCGCCCTCAGGATATTTACTATCTGGACAGGATAGAAGATGAAGACGGGCAGCTGATCTGGGAATCC ACCCAGGCGATTGAAACCCGGAACAATGCCCAGGTACGGAAGGGGGCCACATCCACAGCGACGGCCTTCCAGCTTCACAA TATCCTGAATTCCTCCCTGAAAAACGGTTCAGCCCAGCGCATTGCCCCGCATCTGCCGAAAAACTTCAAGGGCGGCGTGA AAACAGGCACCACGTACGACTTCGCGGACAACTGGCTGTTTGGCTATGACAGCCGCATTACCTGCGGCATCTGGGTAGGT TTCCTGGAAGGCAAAAAGCCCATTTATCACGGAGCCTTCTCGTCAGACACCTGCGCTTCCGTGCTGGGCGCCGCCATCAC GGAAGCGGAACGGCAGTTCCCTGCCGGAGAACTGGCCCCTCCCCCCAGCGTAGAGCGGGTGGAAATCTGCCTGACCACCG GGAAGAGGGCCACGCACAGCTGTTATGACATTGACCCGTCGGATAAAAAATACCGCCGCCACACCATATTCGAATACCTC CGCAAGGGGGATTCCAGCCTGCCCTTCTGCGACCTCCACGGGGAGGACATTTCTGCTCCCGTCTCCACCTTCACTGCCCA GAACCGCATTCTTCCCCTGCCGCCCATCCTGCCCACCAGGCCCATCCTCCAGGGAGACGATCCCTACCATACGGAGCTGA ACCAGGTCCCGGCCAACCGCAACTTTGAACTGCTGGGCGCAGGAGAAAACGTGCCGGAAGCGCAAGCCCTTTCCGCAGAT CCCGTTTCTTCAGACCATACGGATACAAGCATTACGTTGCCGGCACCCAGGCCCATCACCATTCCCGTGCCGGAATTCAT CCACCTGTAA
Upstream 100 bases:
>100_bases CGGGAATCCGTTAGGATTTTTGCACGTTTTCCCCACTCCTCAGGACCAATCCTGCTTCATCTTCATGGCTGAATTAAGTT CACAAGCTCCCCGCAGGCAC
Downstream 100 bases:
>100_bases CTTCTTCACCTCATGCCTTCCCCATCCCAGGACACGGTAGCCTGCACTTGCCCGTCATGCGGCAACCTCTTTGCCGTGAA GGCGTCTTTTCTGGGACGCC
Product: glycosyl transferase family 51
Products: NA
Alternate protein names: PBP-2D; PBP2d [H]
Number of amino acids: Translated: 829; Mature: 829
Protein sequence:
>829_residues MQANKRRHPKAKPRKRFWSFIRKLVLWCLVMAAIGAAVGYFGFMMAWKRYNNWAAEFDLERINDLEKPSIIYDRNGEEIG RIYVENRSYVTLDKISPAMINALIAQEDSRFREHPGYDFLGILRAGREYIHNSGDANQGASSITQQLARNAYDLKNRAKA RNEGSFGRKFVEIALARRITERYSKDQVLEFYLNRVYFGSGFYGIRAASLGYFGKEPADLTTREAASIAALIKNPNGLSP LNNPASNLKWRNHVLNRMAKEKYITPDEAERLSAMELGLNPKPLKRGVSHIYDRISSEITAYLGEERVNAAGLKIYTTID RQLQEVTGKALEQALENIEKQPGYRHQKAADYHSGSANKPRYLEGALLVVDNKSGAVLAYHGGRDYTKRQYDAIRDGARP TGTAILPFLYATAFDTGKSPVTRILDDAIDNRLTGIGGSEGILGEWGAENSKNRYEGMITAHRGLSASKIAASLRMGMEM GTAPFVKKLTDFGIRKPVREAGSTEVNPVYRPKIFVGTEPASLKEMTLAYTAIPNGGSRPQDIYYLDRIEDEDGQLIWES TQAIETRNNAQVRKGATSTATAFQLHNILNSSLKNGSAQRIAPHLPKNFKGGVKTGTTYDFADNWLFGYDSRITCGIWVG FLEGKKPIYHGAFSSDTCASVLGAAITEAERQFPAGELAPPPSVERVEICLTTGKRATHSCYDIDPSDKKYRRHTIFEYL RKGDSSLPFCDLHGEDISAPVSTFTAQNRILPLPPILPTRPILQGDDPYHTELNQVPANRNFELLGAGENVPEAQALSAD PVSSDHTDTSITLPAPRPITIPVPEFIHL
Sequences:
>Translated_829_residues MQANKRRHPKAKPRKRFWSFIRKLVLWCLVMAAIGAAVGYFGFMMAWKRYNNWAAEFDLERINDLEKPSIIYDRNGEEIG RIYVENRSYVTLDKISPAMINALIAQEDSRFREHPGYDFLGILRAGREYIHNSGDANQGASSITQQLARNAYDLKNRAKA RNEGSFGRKFVEIALARRITERYSKDQVLEFYLNRVYFGSGFYGIRAASLGYFGKEPADLTTREAASIAALIKNPNGLSP LNNPASNLKWRNHVLNRMAKEKYITPDEAERLSAMELGLNPKPLKRGVSHIYDRISSEITAYLGEERVNAAGLKIYTTID RQLQEVTGKALEQALENIEKQPGYRHQKAADYHSGSANKPRYLEGALLVVDNKSGAVLAYHGGRDYTKRQYDAIRDGARP TGTAILPFLYATAFDTGKSPVTRILDDAIDNRLTGIGGSEGILGEWGAENSKNRYEGMITAHRGLSASKIAASLRMGMEM GTAPFVKKLTDFGIRKPVREAGSTEVNPVYRPKIFVGTEPASLKEMTLAYTAIPNGGSRPQDIYYLDRIEDEDGQLIWES TQAIETRNNAQVRKGATSTATAFQLHNILNSSLKNGSAQRIAPHLPKNFKGGVKTGTTYDFADNWLFGYDSRITCGIWVG FLEGKKPIYHGAFSSDTCASVLGAAITEAERQFPAGELAPPPSVERVEICLTTGKRATHSCYDIDPSDKKYRRHTIFEYL RKGDSSLPFCDLHGEDISAPVSTFTAQNRILPLPPILPTRPILQGDDPYHTELNQVPANRNFELLGAGENVPEAQALSAD PVSSDHTDTSITLPAPRPITIPVPEFIHL >Mature_829_residues MQANKRRHPKAKPRKRFWSFIRKLVLWCLVMAAIGAAVGYFGFMMAWKRYNNWAAEFDLERINDLEKPSIIYDRNGEEIG RIYVENRSYVTLDKISPAMINALIAQEDSRFREHPGYDFLGILRAGREYIHNSGDANQGASSITQQLARNAYDLKNRAKA RNEGSFGRKFVEIALARRITERYSKDQVLEFYLNRVYFGSGFYGIRAASLGYFGKEPADLTTREAASIAALIKNPNGLSP LNNPASNLKWRNHVLNRMAKEKYITPDEAERLSAMELGLNPKPLKRGVSHIYDRISSEITAYLGEERVNAAGLKIYTTID RQLQEVTGKALEQALENIEKQPGYRHQKAADYHSGSANKPRYLEGALLVVDNKSGAVLAYHGGRDYTKRQYDAIRDGARP TGTAILPFLYATAFDTGKSPVTRILDDAIDNRLTGIGGSEGILGEWGAENSKNRYEGMITAHRGLSASKIAASLRMGMEM GTAPFVKKLTDFGIRKPVREAGSTEVNPVYRPKIFVGTEPASLKEMTLAYTAIPNGGSRPQDIYYLDRIEDEDGQLIWES TQAIETRNNAQVRKGATSTATAFQLHNILNSSLKNGSAQRIAPHLPKNFKGGVKTGTTYDFADNWLFGYDSRITCGIWVG FLEGKKPIYHGAFSSDTCASVLGAAITEAERQFPAGELAPPPSVERVEICLTTGKRATHSCYDIDPSDKKYRRHTIFEYL RKGDSSLPFCDLHGEDISAPVSTFTAQNRILPLPPILPTRPILQGDDPYHTELNQVPANRNFELLGAGENVPEAQALSAD PVSSDHTDTSITLPAPRPITIPVPEFIHL
Specific function: Involved in the polymerization and cross-linking of spore peptidoglycan. May be required for synthesis of the spore germ cell wall, the first layer of peptidoglycan synthesized on the surface of the inner forespore membrane [H]
COG id: COG0744
COG function: function code M; Membrane carboxypeptidase (penicillin-binding protein)
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the transpeptidase family [H]
Homologues:
Organism=Escherichia coli, GI87082258, Length=334, Percent_Identity=35.0299401197605, Blast_Score=168, Evalue=1e-42, Organism=Escherichia coli, GI1786343, Length=584, Percent_Identity=27.9109589041096, Blast_Score=162, Evalue=6e-41, Organism=Escherichia coli, GI1788867, Length=636, Percent_Identity=24.8427672955975, Blast_Score=143, Evalue=5e-35, Organism=Escherichia coli, GI1789601, Length=155, Percent_Identity=40, Blast_Score=100, Evalue=4e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001264 - InterPro: IPR011816 - InterPro: IPR001460 [H]
Pfam domain/function: PF00912 Transgly; PF00905 Transpeptidase [H]
EC number: 2.4.2.-; 3.4.-.- [C]
Molecular weight: Translated: 92194; Mature: 92194
Theoretical pI: Translated: 9.21; Mature: 9.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQANKRRHPKAKPRKRFWSFIRKLVLWCLVMAAIGAAVGYFGFMMAWKRYNNWAAEFDLE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH RINDLEKPSIIYDRNGEEIGRIYVENRSYVTLDKISPAMINALIAQEDSRFREHPGYDFL HHCCCCCCCEEECCCCCEEEEEEECCCCEEEHHCCCHHHHHHHHHHHHHHHHHCCCCHHH GILRAGREYIHNSGDANQGASSITQQLARNAYDLKNRAKARNEGSFGRKFVEIALARRIT HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ERYSKDQVLEFYLNRVYFGSGFYGIRAASLGYFGKEPADLTTREAASIAALIKNPNGLSP HHHCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC LNNPASNLKWRNHVLNRMAKEKYITPDEAERLSAMELGLNPKPLKRGVSHIYDRISSEIT CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AYLGEERVNAAGLKIYTTIDRQLQEVTGKALEQALENIEKQPGYRHQKAADYHSGSANKP HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC RYLEGALLVVDNKSGAVLAYHGGRDYTKRQYDAIRDGARPTGTAILPFLYATAFDTGKSP CEECCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH VTRILDDAIDNRLTGIGGSEGILGEWGAENSKNRYEGMITAHRGLSASKIAASLRMGMEM HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCEEEECCCCCHHHHHHHHHHHHHC GTAPFVKKLTDFGIRKPVREAGSTEVNPVYRPKIFVGTEPASLKEMTLAYTAIPNGGSRP CCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEECCCCCCHHHHEEEEEECCCCCCCC QDIYYLDRIEDEDGQLIWESTQAIETRNNAQVRKGATSTATAFQLHNILNSSLKNGSAQR CCEEEEECCCCCCCCEEECCHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCHHH IAPHLPKNFKGGVKTGTTYDFADNWLFGYDSRITCGIWVGFLEGKKPIYHGAFSSDTCAS HCCCCCCCCCCCCCCCCEEECCCCCEECCCCEEEEEEEEEECCCCCCEEECCCCCHHHHH VLGAAITEAERQFPAGELAPPPSVERVEICLTTGKRATHSCYDIDPSDKKYRRHTIFEYL HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHH RKGDSSLPFCDLHGEDISAPVSTFTAQNRILPLPPILPTRPILQGDDPYHTELNQVPANR HCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC NFELLGAGENVPEAQALSADPVSSDHTDTSITLPAPRPITIPVPEFIHL CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCHHHHCC >Mature Secondary Structure MQANKRRHPKAKPRKRFWSFIRKLVLWCLVMAAIGAAVGYFGFMMAWKRYNNWAAEFDLE CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH RINDLEKPSIIYDRNGEEIGRIYVENRSYVTLDKISPAMINALIAQEDSRFREHPGYDFL HHCCCCCCCEEECCCCCEEEEEEECCCCEEEHHCCCHHHHHHHHHHHHHHHHHCCCCHHH GILRAGREYIHNSGDANQGASSITQQLARNAYDLKNRAKARNEGSFGRKFVEIALARRIT HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH ERYSKDQVLEFYLNRVYFGSGFYGIRAASLGYFGKEPADLTTREAASIAALIKNPNGLSP HHHCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCC LNNPASNLKWRNHVLNRMAKEKYITPDEAERLSAMELGLNPKPLKRGVSHIYDRISSEIT CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH AYLGEERVNAAGLKIYTTIDRQLQEVTGKALEQALENIEKQPGYRHQKAADYHSGSANKP HHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCC RYLEGALLVVDNKSGAVLAYHGGRDYTKRQYDAIRDGARPTGTAILPFLYATAFDTGKSP CEECCEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCH VTRILDDAIDNRLTGIGGSEGILGEWGAENSKNRYEGMITAHRGLSASKIAASLRMGMEM HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCEEEECCCCCHHHHHHHHHHHHHC GTAPFVKKLTDFGIRKPVREAGSTEVNPVYRPKIFVGTEPASLKEMTLAYTAIPNGGSRP CCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCEEEECCCCCCHHHHEEEEEECCCCCCCC QDIYYLDRIEDEDGQLIWESTQAIETRNNAQVRKGATSTATAFQLHNILNSSLKNGSAQR CCEEEEECCCCCCCCEEECCHHHHHCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCHHH IAPHLPKNFKGGVKTGTTYDFADNWLFGYDSRITCGIWVGFLEGKKPIYHGAFSSDTCAS HCCCCCCCCCCCCCCCCEEECCCCCEECCCCEEEEEEEEEECCCCCCEEECCCCCHHHHH VLGAAITEAERQFPAGELAPPPSVERVEICLTTGKRATHSCYDIDPSDKKYRRHTIFEYL HHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHH RKGDSSLPFCDLHGEDISAPVSTFTAQNRILPLPPILPTRPILQGDDPYHTELNQVPANR HCCCCCCCEEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCC NFELLGAGENVPEAQALSADPVSSDHTDTSITLPAPRPITIPVPEFIHL CEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEECCHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Acyltransferases; Aminoacyltransferases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9353933; 9384377 [H]