| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is 187736602
Identifier: 187736602
GI number: 187736602
Start: 2588541
End: 2589929
Strand: Direct
Name: 187736602
Synonym: Amuc_2124
Alternate gene names: NA
Gene position: 2588541-2589929 (Clockwise)
Preceding gene: 187736601
Following gene: 187736603
Centisome position: 97.16
GC content: 57.81
Gene sequence:
>1389_bases ATGAGTTCCAAAGCACTAGCGCAAACACAGGACAAAGCCCTCCAACTCAACCTGGCTTCCACCATTTACGGCACCTTTGC GGAAATCGGAGCCGGACAGGAAACGGCCAACTGGTTTTTCCGGGCATCCGGAGCCGCCGGAACAGTGGCCAAAACCATTT CCGCCTATGACATGACCGTCAGCGACACCCTGTACGGGCCGGTCAAGCGCTACGTTTCTGAAGAACGCCTGAAAGGCATG CTGGACTACGAATTTACCCAGCTCATCAACCGCCTGGGCCCCCAGCGCGGCAAAGACACCCGCTTCTTTGCCTTCTGCAA TACGGTAAAAGTCAAAGGCTACCGGGACAACGGCCCCTGGCACGGCTGGATAGGGGTGCGCTTCCAGCTGAAACCGGAGG CAAAACCGTCCGACCTGATTATTCACGTTCGCCTGAACGACCCGGACCACGACCGCCAGATGAAGGACCTGGGCATCCTG GGCGTCAACATCCTGCACGCCGTCTTTTTCAAAAGGGACCGTCTGGAGGAATTCATTGAATCCCTGGTGGACAATCTGGA TCCCCGGCTGGTGGAAATAGATGTCGTCCGTTTTGAAGGCCACGGTTTTTCCATGGTGGACAACCGTCTTTTCGCGCTCC AGCTCGTCCAGTCCGGCCTGACGCCGGCCACCCTGTTCCTGGCGAACGGCCAGGTGGCCCAGGCGGCGGATGTGCTGTAC AAGCGCCCCATCGTGTTGATGAGGGGCAGTTTCAACCCCGTCTGCAATCTGCACCTGGAAGTCATGGCCCAGGTGAAAAA AACCTTCCTCTCCCACATCAATGAGACGCAGGCGGACCGCTGCATGGAAATTTGTGAAATATCCATGAATAACCTGCTCC GCGGCGATGATGTGGACCATCTGGAATTCCTGGACAGGGCGGACAGCCTCAAGGCTCTCGGCAAAAACGTTCTGATTACC AAAATGGCCCGTTTCGACAACCTGTCCGGGCTGCTGGCGCGCTACACGAGAGAACCCATAGCCATCGCCCTCTCCATCGG CCTGCTGAATGAGCTGTTCAAGGAAAAATGGACGGAGGACATTCCCGGAGGCATTCTGGAATCCTTCGGACGCACCTTCC AGAACAAAACGCGCCTGTACGTCTCCCCGTGGCTCAACCGCAAATCCGGGGAATTCGTCACGGCACGCACTTTCCGCGCG CCGGAACAATACGTGCACCTGTACCAGCACTTCCTGGCGAACGGCCTGGTGGTGGACGTGCCCTTTTTCAATGAATTCCT GCTGCGCCACACGCCGCGGGACATCCAGCGCATGATCGCTGCGGATGAAGACATCTGGAAAACGCTGGTTCCGGAGGAAG CGCACCGTTCCGCCCTCCACTTCCGCTGA
Upstream 100 bases:
>100_bases TATTATTGACCAGCTTCTGCACTCCGGCTGGATGAGCGACGCCACCCGCAGGCTTCTTCCCCCCCAATAATTGAAAATCA AGAATCGGTTCCCGCTTTCC
Downstream 100 bases:
>100_bases GTTCCTTTTCAGCAGGCCGCCCCTTCCTCCCCGCGGCACGGCCCTCCCAATGCCGCGGTCTCTCCGTTCCTGAAACCGGA TAATCCGGCACGGCCCCTCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MSSKALAQTQDKALQLNLASTIYGTFAEIGAGQETANWFFRASGAAGTVAKTISAYDMTVSDTLYGPVKRYVSEERLKGM LDYEFTQLINRLGPQRGKDTRFFAFCNTVKVKGYRDNGPWHGWIGVRFQLKPEAKPSDLIIHVRLNDPDHDRQMKDLGIL GVNILHAVFFKRDRLEEFIESLVDNLDPRLVEIDVVRFEGHGFSMVDNRLFALQLVQSGLTPATLFLANGQVAQAADVLY KRPIVLMRGSFNPVCNLHLEVMAQVKKTFLSHINETQADRCMEICEISMNNLLRGDDVDHLEFLDRADSLKALGKNVLIT KMARFDNLSGLLARYTREPIAIALSIGLLNELFKEKWTEDIPGGILESFGRTFQNKTRLYVSPWLNRKSGEFVTARTFRA PEQYVHLYQHFLANGLVVDVPFFNEFLLRHTPRDIQRMIAADEDIWKTLVPEEAHRSALHFR
Sequences:
>Translated_462_residues MSSKALAQTQDKALQLNLASTIYGTFAEIGAGQETANWFFRASGAAGTVAKTISAYDMTVSDTLYGPVKRYVSEERLKGM LDYEFTQLINRLGPQRGKDTRFFAFCNTVKVKGYRDNGPWHGWIGVRFQLKPEAKPSDLIIHVRLNDPDHDRQMKDLGIL GVNILHAVFFKRDRLEEFIESLVDNLDPRLVEIDVVRFEGHGFSMVDNRLFALQLVQSGLTPATLFLANGQVAQAADVLY KRPIVLMRGSFNPVCNLHLEVMAQVKKTFLSHINETQADRCMEICEISMNNLLRGDDVDHLEFLDRADSLKALGKNVLIT KMARFDNLSGLLARYTREPIAIALSIGLLNELFKEKWTEDIPGGILESFGRTFQNKTRLYVSPWLNRKSGEFVTARTFRA PEQYVHLYQHFLANGLVVDVPFFNEFLLRHTPRDIQRMIAADEDIWKTLVPEEAHRSALHFR >Mature_461_residues SSKALAQTQDKALQLNLASTIYGTFAEIGAGQETANWFFRASGAAGTVAKTISAYDMTVSDTLYGPVKRYVSEERLKGML DYEFTQLINRLGPQRGKDTRFFAFCNTVKVKGYRDNGPWHGWIGVRFQLKPEAKPSDLIIHVRLNDPDHDRQMKDLGILG VNILHAVFFKRDRLEEFIESLVDNLDPRLVEIDVVRFEGHGFSMVDNRLFALQLVQSGLTPATLFLANGQVAQAADVLYK RPIVLMRGSFNPVCNLHLEVMAQVKKTFLSHINETQADRCMEICEISMNNLLRGDDVDHLEFLDRADSLKALGKNVLITK MARFDNLSGLLARYTREPIAIALSIGLLNELFKEKWTEDIPGGILESFGRTFQNKTRLYVSPWLNRKSGEFVTARTFRAP EQYVHLYQHFLANGLVVDVPFFNEFLLRHTPRDIQRMIAADEDIWKTLVPEEAHRSALHFR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52599; Mature: 52468
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKALAQTQDKALQLNLASTIYGTFAEIGAGQETANWFFRASGAAGTVAKTISAYDMTV CCCCHHHHHCCHHEEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCEEH SDTLYGPVKRYVSEERLKGMLDYEFTQLINRLGPQRGKDTRFFAFCNTVKVKGYRDNGPW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCCCE HGWIGVRFQLKPEAKPSDLIIHVRLNDPDHDRQMKDLGILGVNILHAVFFKRDRLEEFIE EEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVDNLDPRLVEIDVVRFEGHGFSMVDNRLFALQLVQSGLTPATLFLANGQVAQAADVLY HHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH KRPIVLMRGSFNPVCNLHLEVMAQVKKTFLSHINETQADRCMEICEISMNNLLRGDDVDH HCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHH LEFLDRADSLKALGKNVLITKMARFDNLSGLLARYTREPIAIALSIGLLNELFKEKWTED HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCC IPGGILESFGRTFQNKTRLYVSPWLNRKSGEFVTARTFRAPEQYVHLYQHFLANGLVVDV CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEC PFFNEFLLRHTPRDIQRMIAADEDIWKTLVPEEAHRSALHFR CHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCCHHHHHHCCCC >Mature Secondary Structure SSKALAQTQDKALQLNLASTIYGTFAEIGAGQETANWFFRASGAAGTVAKTISAYDMTV CCCHHHHHCCHHEEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCEEH SDTLYGPVKRYVSEERLKGMLDYEFTQLINRLGPQRGKDTRFFAFCNTVKVKGYRDNGPW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEECCCCE HGWIGVRFQLKPEAKPSDLIIHVRLNDPDHDRQMKDLGILGVNILHAVFFKRDRLEEFIE EEEEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLVDNLDPRLVEIDVVRFEGHGFSMVDNRLFALQLVQSGLTPATLFLANGQVAQAADVLY HHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHH KRPIVLMRGSFNPVCNLHLEVMAQVKKTFLSHINETQADRCMEICEISMNNLLRGDDVDH HCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHH LEFLDRADSLKALGKNVLITKMARFDNLSGLLARYTREPIAIALSIGLLNELFKEKWTED HHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHCCCC IPGGILESFGRTFQNKTRLYVSPWLNRKSGEFVTARTFRAPEQYVHLYQHFLANGLVVDV CCHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEC PFFNEFLLRHTPRDIQRMIAADEDIWKTLVPEEAHRSALHFR CHHHHHHHHCCCHHHHHHHHCCHHHHHHHCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA