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The map label for this gene is rnhB [H]

Identifier: 187735061

GI number: 187735061

Start: 653806

End: 654450

Strand: Reverse

Name: rnhB [H]

Synonym: Amuc_0554

Alternate gene names: 187735061

Gene position: 654450-653806 (Counterclockwise)

Preceding gene: 187735062

Following gene: 187735060

Centisome position: 24.57

GC content: 58.45

Gene sequence:

>645_bases
ATGAAGGAAAAACCGCATCCGGATATGAGTTTTGAGATGGAGGCCCGGGCCTCCGGTTTTCTTTGCGTGGCTGGAGTGGA
TGAGGCCGGGCGCGGGCCGTTGGCCGGTCCCGTGGTAGCCGGCGCCGTTATTTTGCCTGTTCTGGCGGAGGAGTTAACCG
GTTTGAACGATTCCAAGCAGTTGACCGCAGCAAAAAGGGAACGCCTGTTTCTGGCTCTTTTGGAGTGTGAACAGGCGGTG
TGTTCCGTAGGAGTGGCTTCCGTGGAAGAAATAGACCGGTTCAACATTTTGAGGGCCACTCATCTGGCGATGGCGCGTGC
GGTGGAAGGTCTGGCCCTGCGTGCAGATTTCTGCCTGGTGGATGGATTGCCTGTCAAGGGGCTTCCTGTGCCGCACCGCG
CCATTGTAAAGGGGGACGGCAGGAGCCTTTCCATAGCCGCCGCCAGCGTTCTAGCCAAGGTGACGAGGGACCGCATGATG
ATGGAAGCGGACGCTTCCTACCCGCAGTATGGTTTTGCAAAACACAAGGGATATGGCACAAAAGCCCACATGGAAGCTCT
GCGGCGGCATGGGCCCTGTCCGCTCCATCGCCGCTCGTTTGCGCCGGTTTCACAAATGGAACTGTCCATCCCTGAGCAGG
GGTAA

Upstream 100 bases:

>100_bases
ATTGGCCGCTACCGGGCTGTGGTGACGGGGTCTGACGGCAGGAGAATCACGCAGATTCTGCTGGCCCGCCTTCCGGAGGA
ACAGGAGGAGGAATAGCGCC

Downstream 100 bases:

>100_bases
GCGGGATACGGCATGGCTGGGAATGTACGGGGAACTGGCTGCGGCCTCCTTCCTGCGTGCGGAAGGGTGCGTTATCCTGA
GGAGAAACTGGCGTCCCGTC

Product: Ribonuclease H

Products: NA

Alternate protein names: RNase HII [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MKEKPHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAAKRERLFLALLECEQAV
CSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGLPVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMM
MEADASYPQYGFAKHKGYGTKAHMEALRRHGPCPLHRRSFAPVSQMELSIPEQG

Sequences:

>Translated_214_residues
MKEKPHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAAKRERLFLALLECEQAV
CSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGLPVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMM
MEADASYPQYGFAKHKGYGTKAHMEALRRHGPCPLHRRSFAPVSQMELSIPEQG
>Mature_214_residues
MKEKPHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQLTAAKRERLFLALLECEQAV
CSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLVDGLPVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMM
MEADASYPQYGFAKHKGYGTKAHMEALRRHGPCPLHRRSFAPVSQMELSIPEQG

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG0164

COG function: function code L; Ribonuclease HII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family [H]

Homologues:

Organism=Escherichia coli, GI1786380, Length=184, Percent_Identity=52.1739130434783, Blast_Score=168, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022898
- InterPro:   IPR001352
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 22984; Mature: 22984

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEKPHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQ
CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LTAAKRERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLV
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
DGLPVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYGT
CCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCC
KAHMEALRRHGPCPLHRRSFAPVSQMELSIPEQG
HHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCC
>Mature Secondary Structure
MKEKPHPDMSFEMEARASGFLCVAGVDEAGRGPLAGPVVAGAVILPVLAEELTGLNDSKQ
CCCCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LTAAKRERLFLALLECEQAVCSVGVASVEEIDRFNILRATHLAMARAVEGLALRADFCLV
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEEE
DGLPVKGLPVPHRAIVKGDGRSLSIAAASVLAKVTRDRMMMEADASYPQYGFAKHKGYGT
CCCCCCCCCCCCCEEEECCCCEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCC
KAHMEALRRHGPCPLHRRSFAPVSQMELSIPEQG
HHHHHHHHHCCCCCCCCCCCCCHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA