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The map label for this gene is ycdC [C]

Identifier: 187734885

GI number: 187734885

Start: 451218

End: 451892

Strand: Reverse

Name: ycdC [C]

Synonym: Amuc_0377

Alternate gene names: 187734885

Gene position: 451892-451218 (Counterclockwise)

Preceding gene: 187734886

Following gene: 187734883

Centisome position: 16.96

GC content: 49.19

Gene sequence:

>675_bases
ATGTCTTCTACCCGCAAATCCCAGTCCGACCGTTCTGCGGAAACCAGCGGCAAAATCCTCCGTGCTGCACAGAAGCTTTT
TGCCCTCAGGGGATTTAATGGCGTGACCATGAGGGCGGTCGCTTCTGAAGCAGGAGTTAATCTGGCTTCTATCGTTTACT
ATTTTGAGAATAAGGAGGGACTGTATCTGGCTGTTTACAGACAATATGCGGAACCTCTGATGAAAGCGCGCATGAAGATG
CTGAAAGAGGCGGATCTTCATCCGTCCCTGAGGGCGTATGCCCGTGCATTTATAGAACCTGCTTTCCGGCTATTTCTGGA
TGAGAGCCTGGGAGGGCCGGATCATGTCCGTTTATTGTGGCGTTTGCCGCAGGAGCCGGAATATCTGGGAAGAAAAATCT
ATGATGAATTTTATGCTCCATCTATCCAGGAGATGATAGCAAGAATTCGGAGATTCTGTCCGTGGGATGATGAGCTTTCC
TTATCTTGGCATGCGCATATCATGAGTTCCATCTTCCATGCTACGTTGGGGAAATATGTCGCGTGCATGGATCTTCAAGA
AAAGGAACCGTGGATGAAGGATCAGGAGCACATTTTGCAGATGATTGTGAATACCGCCGTTTTTCTGATCTCCCGTCCGG
CTCTGTCTCCGGAGGAAGAGGAAAGGCAGGGATAA

Upstream 100 bases:

>100_bases
CAAGCCTATTCAGTCCTCCCAAAACATGGAACAGTTGGTAAAAGCCATCGGCTCAAGCCGTTCTTCCCGCTAGGCGGCGC
ATTGTCTGATTGTTGAGGAG

Downstream 100 bases:

>100_bases
CATGGCTGGGGGTGTGCGTTTTTCGTTACGCTTCTCCCAGTTCTTTTCTGAGAGTTCTGACTGTTCCCGTGATGTCGGGG
TGTGTAAGCAGCCAGGAAAC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator; Regulatory Protein TetR; Regulatory Protein Tetr; TetR Family Regulatory Protein; Transcriptional Regulator Transcription Regulator Protein; Transcriptional Regulator TetR

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MSSTRKSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEGLYLAVYRQYAEPLMKARMKM
LKEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLWRLPQEPEYLGRKIYDEFYAPSIQEMIARIRRFCPWDDELS
LSWHAHIMSSIFHATLGKYVACMDLQEKEPWMKDQEHILQMIVNTAVFLISRPALSPEEEERQG

Sequences:

>Translated_224_residues
MSSTRKSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEGLYLAVYRQYAEPLMKARMKM
LKEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLWRLPQEPEYLGRKIYDEFYAPSIQEMIARIRRFCPWDDELS
LSWHAHIMSSIFHATLGKYVACMDLQEKEPWMKDQEHILQMIVNTAVFLISRPALSPEEEERQG
>Mature_223_residues
SSTRKSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEGLYLAVYRQYAEPLMKARMKML
KEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLWRLPQEPEYLGRKIYDEFYAPSIQEMIARIRRFCPWDDELSL
SWHAHIMSSIFHATLGKYVACMDLQEKEPWMKDQEHILQMIVNTAVFLISRPALSPEEEERQG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25882; Mature: 25751

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTRKSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEG
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHEEEEECCCC
LYLAVYRQYAEPLMKARMKMLKEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLW
EEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLPQEPEYLGRKIYDEFYAPSIQEMIARIRRFCPWDDELSLSWHAHIMSSIFHATLGKYV
HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ACMDLQEKEPWMKDQEHILQMIVNTAVFLISRPALSPEEEERQG
HHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC
>Mature Secondary Structure 
SSTRKSQSDRSAETSGKILRAAQKLFALRGFNGVTMRAVASEAGVNLASIVYYFENKEG
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHEEEEECCCC
LYLAVYRQYAEPLMKARMKMLKEADLHPSLRAYARAFIEPAFRLFLDESLGGPDHVRLLW
EEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
RLPQEPEYLGRKIYDEFYAPSIQEMIARIRRFCPWDDELSLSWHAHIMSSIFHATLGKYV
HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ACMDLQEKEPWMKDQEHILQMIVNTAVFLISRPALSPEEEERQG
HHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA