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The map label for this gene is rlpA [H]

Identifier: 187734790

GI number: 187734790

Start: 339446

End: 339964

Strand: Direct

Name: rlpA [H]

Synonym: Amuc_0279

Alternate gene names: 187734790

Gene position: 339446-339964 (Clockwise)

Preceding gene: 187734782

Following gene: 187734792

Centisome position: 12.74

GC content: 57.61

Gene sequence:

>519_bases
ATGCAGACAGGTATCCTCAGGGGAATGTCCGTGCTGGCCGGGCTGCTATGGCTGGCATCCTGCTCGTCCTCTCCCAAAAG
CCGGGATTATCCGGGCTACATGACCCGCCCCTATACCATCCGGGGGCACCGCTACCATCCCATGAACGTGGAACAGGCGC
TGGCGTATGAACAAACGGGAATTGCCTCCCATTACAATGAATGCGCCCTTTGGGGGCTCGTCAGCGGAAAAACGGCGATC
GGAGAAAACGTGCGCCCCTGGCACCTGCACGCAGCGCATCCCACCCTTCCCCTCCCGTGCGAAGTGCTCGTTCAATCCCT
TCGAACAGGCAAAACCGTAAAAGTCCGCGTAAACGACCGGGGCCCCTTCATCAAAAACAGAATCATAGATCTTAGTGAAG
AAGCCGCAGAACGGCTGGACATGAAGCACCATGGGCTGGACAAAGTCAGAATCACCGTCCTTTCCGTAGGAGACGGGAAA
TGGAAAAAAGAAGCGCCCCCTTGCGCCACTCCGGCCTGA

Upstream 100 bases:

>100_bases
CCGGGAAACATCACGCCACTTCCGGAAGACTGCTTTTCACGGGCGGAAAAACGCGCCCGCGTCTTGCATTTCATCATCTC
CCCGTCCATATAATAAAATC

Downstream 100 bases:

>100_bases
TTCCCTACTTCAACACATTCCGTGTGGTCTTAAAATGCATCTTGGCCACCTTGGGCAGCATTTCTTCCCCATGCAGGGCC
ACCAGCTGGCGCGCAGCTTT

Product: Rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MQTGILRGMSVLAGLLWLASCSSSPKSRDYPGYMTRPYTIRGHRYHPMNVEQALAYEQTGIASHYNECALWGLVSGKTAI
GENVRPWHLHAAHPTLPLPCEVLVQSLRTGKTVKVRVNDRGPFIKNRIIDLSEEAAERLDMKHHGLDKVRITVLSVGDGK
WKKEAPPCATPA

Sequences:

>Translated_172_residues
MQTGILRGMSVLAGLLWLASCSSSPKSRDYPGYMTRPYTIRGHRYHPMNVEQALAYEQTGIASHYNECALWGLVSGKTAI
GENVRPWHLHAAHPTLPLPCEVLVQSLRTGKTVKVRVNDRGPFIKNRIIDLSEEAAERLDMKHHGLDKVRITVLSVGDGK
WKKEAPPCATPA
>Mature_172_residues
MQTGILRGMSVLAGLLWLASCSSSPKSRDYPGYMTRPYTIRGHRYHPMNVEQALAYEQTGIASHYNECALWGLVSGKTAI
GENVRPWHLHAAHPTLPLPCEVLVQSLRTGKTVKVRVNDRGPFIKNRIIDLSEEAAERLDMKHHGLDKVRITVLSVGDGK
WKKEAPPCATPA

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=184, Percent_Identity=32.0652173913043, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 19093; Mature: 19093

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTGILRGMSVLAGLLWLASCSSSPKSRDYPGYMTRPYTIRGHRYHPMNVEQALAYEQTG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEECCCCHHHHHHHHHHC
IASHYNECALWGLVSGKTAIGENVRPWHLHAAHPTLPLPCEVLVQSLRTGKTVKVRVNDR
CHHHCCCEEEEEECCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCC
GPFIKNRIIDLSEEAAERLDMKHHGLDKVRITVLSVGDGKWKKEAPPCATPA
CCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTGILRGMSVLAGLLWLASCSSSPKSRDYPGYMTRPYTIRGHRYHPMNVEQALAYEQTG
CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCEECCCCHHHHHHHHHHC
IASHYNECALWGLVSGKTAIGENVRPWHLHAAHPTLPLPCEVLVQSLRTGKTVKVRVNDR
CHHHCCCEEEEEECCCCHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCEEEEEECCC
GPFIKNRIIDLSEEAAERLDMKHHGLDKVRITVLSVGDGKWKKEAPPCATPA
CCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10688204 [H]