| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477738
Identifier: 186477738
GI number: 186477738
Start: 3349406
End: 3351880
Strand: Reverse
Name: 186477738
Synonym: Bphy_2992
Alternate gene names: NA
Gene position: 3351880-3349406 (Counterclockwise)
Preceding gene: 186477739
Following gene: 186477734
Centisome position: 96.34
GC content: 63.52
Gene sequence:
>2475_bases ATGCGAGCCGCACTTCCGACGACACAAAGGATCACAGTGGATCACGCAAATCTTCTCAATACCGCGCTCGCGCACCACCA GGCCGGCCGGCTCGCCGAAGCCAAGGCGATCTACGACGAGATCCTGCGCGCCAATCCCCGGCATTCCGATGCGTTGCATT TTCTCGGGCTGCTCGCCTGCCAGATTCAACAGTACGACGCGGGCATTACGCTGATGCGCCAGTCGATCGCGATTCTGCCC AACGCGATCTATCACAACAACCTCGGCAACGCGCTGCGCGAGCACGGGCAACTAAAGCAGGCGATCGACGGTTATCGCGA GGCCGTCACGCTCGATCCGGGCTACGCGGAAGCGCACAACAATCTGGGCAATGCACTGCGCGAAGACCGTCAGCCGGACG CGGCGATGCGAAGCTGCGCGCACGCCATCGAATTGCGGCCCGGTTTTGCGGAGGCATACAACAATCTCGGCAACGCGTTA AAAGATCTCGGCGAGCTGGATAATGCCGCGCTTGCGTATCGCAAGGCGATTTCGTTCAGGCAGAACTACGCGGACGCGCA CAACAATCTCGGCAACGCGCTGATGGAGCAGGGCAAGTACGACGAGGCAATCGACAGTTATCGCAGCGCGATCGCCCTCG ACGCGAACCGCGCGTTGATGCACAACAGTCTGGGCACGCTGCTGCTTGCGCGCGGCGAACTCGACGAGGCTGCGGCGAGT CTGCAGAGGGCGGTCGAACTCGATCCCAACAGGCCGGGCGTGCACAACAACCTGGCCAATACGCTGCGCGACATGGGCAG ACTGGAAGAGGCGCGCACCCATTACTCGCGGGCGTTGCAGCTTGCGCAGGCGATCATCGACTCGTACCGGGGCGGCGCGG CGGCGCCGTTTGCGCAAGTCCGTTCGACCGAACCGCGCCTGACGCTCGCCGAGGGTTATGCGACGCTCGGCAATGCGTGG TACGGCCTGTATCGCTACGACGAGGCGATCGACAGCTATTTGCGATCCGTCGAGCTTGCCGACGACGATGCCGAAGTTCA TCACAATCTCGCCGTCGCGTATCTGAAGACGGAGCGTCCCGCGCAAGCACTGCATTACGCGCGCAAGGCGCTTGAACTCA AGGACGGTTCCTCGCGGATGCACATCAATCTCGGCGACGTCCTGCGCTCGCTGGGCGAACTGGAGGCCGCCGCGAACAGC TATCGGAGCGCGATCGAGCGGTCGCCCGATGCCGACGTCGCGCACACGGCATTGCTGTTTTGTGAGGCAAGCATGTCGCG GCGACCGGTCGAAGATTATCTGGCCGATGCCGTCTACTTCGGCAAGCGCATGGCCGCGAACGTCACGCCGTTCACGCACA CGCGCATGCCGCGCGGCTCGCGGCCGCTGCGCGTGGGCTTTGTCTCGGGCGATTTGCGCACACATCCCGTCGGCATCTTC ACCGAAAGCGTGTTGCGTCATATCGATCCGTCGCGTGTCGAGCTGATCGCCTATCAGACCAACGACGTCGAAGACGACAC GACGCAGCGTCTCAAGCCGCTTTTCGGTGAATGGACGCAGCTTTCGAAGCTCTCACGCGAGGCCGCCGCCAAGCGGATCT TCGACGATCGTATCGACATTCTGCTCGACATGTCGGGTCACACGGCCTTCAACCGGCTCGCCGTGTTCGCGATGAAACCG GCGCCCGTGCAGGTGACGTGGCTGGGGTTCTTTGCATCGACGGGCATCGAGCAGATCGACTATGTGCTCGGCGACCGCTA TGTGTTGCCGCCCGAAGAAGCACATCATTTCATCGAAAAGCCGTGGCATCTGCCGGACGGATACCTGTGCATGACGCCGC CCGCGCACGATGTTGCCGTAGGTGCGCTGCCGATGCTGGCGAATGGCTTCGTCACCTTCGGCTATCTCGGCAAGCTCGCG AAAGTGACGGACGACGTGCTCGATCTGTGGGCGCGCGTGCTGCGCGAAGTGCCCGGTTCTCGCCTTCTCATCAAGGCGCA TGAGCTCGACCGCAAGCATGCCGTCGACGCGACGCGTCGGCGCTTCGCCGGGCGCGGCCTCGACGCGGAACGGCTTCTGC TCGAAGGCGGATCGAAGCGCGACGAGTACTTCAAGACGTATCATCGCGTCGATATCGTGCTCAGTCCGTTCCCGTATCCG GGCGGTACGACGACGGCGGAAGCACTGTGGATGGGGGTGCCCGTCGTCGCGATGAAGGGCGACCGCTTTCTCGGTCACAT CTGCGAAAGCGTGCTGCAGTCGGCCGGCTTCGGCGACTGGGTCACCGGCGATGCGCAGGGCTACATCGCGATTGCGCGCG CACTGGCCGCCGACCGCGACGCGCTGGCCACGCTGCGCGCCGGTTTGCGCGAACATGTTCTGGCCTCGCCGATGTGTGAC GCGCAACGCTTCGCGCGCAACTTCGAAGATGCGCTCGACGGCATGTGGCGCGTGTACGAGCGAGACTCTGCCTGA
Upstream 100 bases:
>100_bases GCCGCTGTGCGATGCACGGCGCTTCGCGACCAATCTGAAAGCAGCATTCGAAGGCATGTGGGCGCAATACGTTTCGCGCG CTGCTTGAGGCGAAGCGGGC
Downstream 100 bases:
>100_bases ACGCGCAGCGCCTTGAAACGGCGATTGCGCGGCCGTGAGGCGCAATCGCGGACCTCGCTGCGCAGACCTCATTGAGATCC ACGGGCGAAAAAAAAAGCTG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MRAALPTTQRITVDHANLLNTALAHHQAGRLAEAKAIYDEILRANPRHSDALHFLGLLACQIQQYDAGITLMRQSIAILP NAIYHNNLGNALREHGQLKQAIDGYREAVTLDPGYAEAHNNLGNALREDRQPDAAMRSCAHAIELRPGFAEAYNNLGNAL KDLGELDNAALAYRKAISFRQNYADAHNNLGNALMEQGKYDEAIDSYRSAIALDANRALMHNSLGTLLLARGELDEAAAS LQRAVELDPNRPGVHNNLANTLRDMGRLEEARTHYSRALQLAQAIIDSYRGGAAAPFAQVRSTEPRLTLAEGYATLGNAW YGLYRYDEAIDSYLRSVELADDDAEVHHNLAVAYLKTERPAQALHYARKALELKDGSSRMHINLGDVLRSLGELEAAANS YRSAIERSPDADVAHTALLFCEASMSRRPVEDYLADAVYFGKRMAANVTPFTHTRMPRGSRPLRVGFVSGDLRTHPVGIF TESVLRHIDPSRVELIAYQTNDVEDDTTQRLKPLFGEWTQLSKLSREAAAKRIFDDRIDILLDMSGHTAFNRLAVFAMKP APVQVTWLGFFASTGIEQIDYVLGDRYVLPPEEAHHFIEKPWHLPDGYLCMTPPAHDVAVGALPMLANGFVTFGYLGKLA KVTDDVLDLWARVLREVPGSRLLIKAHELDRKHAVDATRRRFAGRGLDAERLLLEGGSKRDEYFKTYHRVDIVLSPFPYP GGTTTAEALWMGVPVVAMKGDRFLGHICESVLQSAGFGDWVTGDAQGYIAIARALAADRDALATLRAGLREHVLASPMCD AQRFARNFEDALDGMWRVYERDSA
Sequences:
>Translated_824_residues MRAALPTTQRITVDHANLLNTALAHHQAGRLAEAKAIYDEILRANPRHSDALHFLGLLACQIQQYDAGITLMRQSIAILP NAIYHNNLGNALREHGQLKQAIDGYREAVTLDPGYAEAHNNLGNALREDRQPDAAMRSCAHAIELRPGFAEAYNNLGNAL KDLGELDNAALAYRKAISFRQNYADAHNNLGNALMEQGKYDEAIDSYRSAIALDANRALMHNSLGTLLLARGELDEAAAS LQRAVELDPNRPGVHNNLANTLRDMGRLEEARTHYSRALQLAQAIIDSYRGGAAAPFAQVRSTEPRLTLAEGYATLGNAW YGLYRYDEAIDSYLRSVELADDDAEVHHNLAVAYLKTERPAQALHYARKALELKDGSSRMHINLGDVLRSLGELEAAANS YRSAIERSPDADVAHTALLFCEASMSRRPVEDYLADAVYFGKRMAANVTPFTHTRMPRGSRPLRVGFVSGDLRTHPVGIF TESVLRHIDPSRVELIAYQTNDVEDDTTQRLKPLFGEWTQLSKLSREAAAKRIFDDRIDILLDMSGHTAFNRLAVFAMKP APVQVTWLGFFASTGIEQIDYVLGDRYVLPPEEAHHFIEKPWHLPDGYLCMTPPAHDVAVGALPMLANGFVTFGYLGKLA KVTDDVLDLWARVLREVPGSRLLIKAHELDRKHAVDATRRRFAGRGLDAERLLLEGGSKRDEYFKTYHRVDIVLSPFPYP GGTTTAEALWMGVPVVAMKGDRFLGHICESVLQSAGFGDWVTGDAQGYIAIARALAADRDALATLRAGLREHVLASPMCD AQRFARNFEDALDGMWRVYERDSA >Mature_824_residues MRAALPTTQRITVDHANLLNTALAHHQAGRLAEAKAIYDEILRANPRHSDALHFLGLLACQIQQYDAGITLMRQSIAILP NAIYHNNLGNALREHGQLKQAIDGYREAVTLDPGYAEAHNNLGNALREDRQPDAAMRSCAHAIELRPGFAEAYNNLGNAL KDLGELDNAALAYRKAISFRQNYADAHNNLGNALMEQGKYDEAIDSYRSAIALDANRALMHNSLGTLLLARGELDEAAAS LQRAVELDPNRPGVHNNLANTLRDMGRLEEARTHYSRALQLAQAIIDSYRGGAAAPFAQVRSTEPRLTLAEGYATLGNAW YGLYRYDEAIDSYLRSVELADDDAEVHHNLAVAYLKTERPAQALHYARKALELKDGSSRMHINLGDVLRSLGELEAAANS YRSAIERSPDADVAHTALLFCEASMSRRPVEDYLADAVYFGKRMAANVTPFTHTRMPRGSRPLRVGFVSGDLRTHPVGIF TESVLRHIDPSRVELIAYQTNDVEDDTTQRLKPLFGEWTQLSKLSREAAAKRIFDDRIDILLDMSGHTAFNRLAVFAMKP APVQVTWLGFFASTGIEQIDYVLGDRYVLPPEEAHHFIEKPWHLPDGYLCMTPPAHDVAVGALPMLANGFVTFGYLGKLA KVTDDVLDLWARVLREVPGSRLLIKAHELDRKHAVDATRRRFAGRGLDAERLLLEGGSKRDEYFKTYHRVDIVLSPFPYP GGTTTAEALWMGVPVVAMKGDRFLGHICESVLQSAGFGDWVTGDAQGYIAIARALAADRDALATLRAGLREHVLASPMCD AQRFARNFEDALDGMWRVYERDSA
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 9 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=605, Percent_Identity=27.9338842975207, Blast_Score=219, Evalue=6e-57, Organism=Homo sapiens, GI32307150, Length=605, Percent_Identity=27.9338842975207, Blast_Score=219, Evalue=7e-57, Organism=Homo sapiens, GI301336134, Length=365, Percent_Identity=29.8630136986301, Blast_Score=129, Evalue=2e-29, Organism=Homo sapiens, GI83415184, Length=365, Percent_Identity=29.8630136986301, Blast_Score=128, Evalue=3e-29, Organism=Homo sapiens, GI118766328, Length=247, Percent_Identity=32.3886639676113, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI118766330, Length=247, Percent_Identity=32.3886639676113, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI22749211, Length=251, Percent_Identity=27.0916334661355, Blast_Score=80, Evalue=8e-15, Organism=Homo sapiens, GI224809432, Length=346, Percent_Identity=23.6994219653179, Blast_Score=69, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115532692, Length=583, Percent_Identity=27.958833619211, Blast_Score=212, Evalue=7e-55, Organism=Caenorhabditis elegans, GI115532690, Length=583, Percent_Identity=27.7873070325901, Blast_Score=212, Evalue=8e-55, Organism=Caenorhabditis elegans, GI25147174, Length=253, Percent_Identity=25.6916996047431, Blast_Score=87, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6319387, Length=204, Percent_Identity=26.9607843137255, Blast_Score=65, Evalue=6e-11, Organism=Drosophila melanogaster, GI17647755, Length=688, Percent_Identity=27.0348837209302, Blast_Score=228, Evalue=1e-59, Organism=Drosophila melanogaster, GI24585827, Length=688, Percent_Identity=27.0348837209302, Blast_Score=228, Evalue=1e-59, Organism=Drosophila melanogaster, GI24585829, Length=688, Percent_Identity=27.0348837209302, Blast_Score=228, Evalue=1e-59, Organism=Drosophila melanogaster, GI161076610, Length=358, Percent_Identity=30.1675977653631, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI19920486, Length=358, Percent_Identity=30.1675977653631, Blast_Score=115, Evalue=1e-25, Organism=Drosophila melanogaster, GI24647123, Length=296, Percent_Identity=27.7027027027027, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24581187, Length=366, Percent_Identity=26.775956284153, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI281364285, Length=366, Percent_Identity=26.775956284153, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24656717, Length=345, Percent_Identity=24.9275362318841, Blast_Score=87, Evalue=3e-17, Organism=Drosophila melanogaster, GI18110006, Length=345, Percent_Identity=24.9275362318841, Blast_Score=87, Evalue=3e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR013105 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1; PF07719 TPR_2 [H]
EC number: NA
Molecular weight: Translated: 91328; Mature: 91328
Theoretical pI: Translated: 6.54; Mature: 6.54
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAALPTTQRITVDHANLLNTALAHHQAGRLAEAKAIYDEILRANPRHSDALHFLGLLAC CCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH QIQQYDAGITLMRQSIAILPNAIYHNNLGNALREHGQLKQAIDGYREAVTLDPGYAEAHN HHHHHCCHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH NLGNALREDRQPDAAMRSCAHAIELRPGFAEAYNNLGNALKDLGELDNAALAYRKAISFR HHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNYADAHNNLGNALMEQGKYDEAIDSYRSAIALDANRALMHNSLGTLLLARGELDEAAAS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHHHHHHCHHHHEEECCCHHHHHHH LQRAVELDPNRPGVHNNLANTLRDMGRLEEARTHYSRALQLAQAIIDSYRGGAAAPFAQV HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RSTEPRLTLAEGYATLGNAWYGLYRYDEAIDSYLRSVELADDDAEVHHNLAVAYLKTERP CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEEECCCH AQALHYARKALELKDGSSRMHINLGDVLRSLGELEAAANSYRSAIERSPDADVAHTALLF HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH CEASMSRRPVEDYLADAVYFGKRMAANVTPFTHTRMPRGSRPLRVGFVSGDLRTHPVGIF HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH TESVLRHIDPSRVELIAYQTNDVEDDTTQRLKPLFGEWTQLSKLSREAAAKRIFDDRIDI HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE LLDMSGHTAFNRLAVFAMKPAPVQVTWLGFFASTGIEQIDYVLGDRYVLPPEEAHHFIEK EEECCCCHHHHHHEEEEECCCCEEEEEEHHHHHCCHHHHHHHHCCCEECCCHHHHHHHHC PWHLPDGYLCMTPPAHDVAVGALPMLANGFVTFGYLGKLAKVTDDVLDLWARVLREVPGS CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RLLIKAHELDRKHAVDATRRRFAGRGLDAERLLLEGGSKRDEYFKTYHRVDIVLSPFPYP EEEEEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCC GGTTTAEALWMGVPVVAMKGDRFLGHICESVLQSAGFGDWVTGDAQGYIAIARALAADRD CCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHH ALATLRAGLREHVLASPMCDAQRFARNFEDALDGMWRVYERDSA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MRAALPTTQRITVDHANLLNTALAHHQAGRLAEAKAIYDEILRANPRHSDALHFLGLLAC CCCCCCCCCEEEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH QIQQYDAGITLMRQSIAILPNAIYHNNLGNALREHGQLKQAIDGYREAVTLDPGYAEAHN HHHHHCCHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHH NLGNALREDRQPDAAMRSCAHAIELRPGFAEAYNNLGNALKDLGELDNAALAYRKAISFR HHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QNYADAHNNLGNALMEQGKYDEAIDSYRSAIALDANRALMHNSLGTLLLARGELDEAAAS HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHHHHHHCHHHHEEECCCHHHHHHH LQRAVELDPNRPGVHNNLANTLRDMGRLEEARTHYSRALQLAQAIIDSYRGGAAAPFAQV HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH RSTEPRLTLAEGYATLGNAWYGLYRYDEAIDSYLRSVELADDDAEVHHNLAVAYLKTERP CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCEEEEEEECCCH AQALHYARKALELKDGSSRMHINLGDVLRSLGELEAAANSYRSAIERSPDADVAHTALLF HHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH CEASMSRRPVEDYLADAVYFGKRMAANVTPFTHTRMPRGSRPLRVGFVSGDLRTHPVGIF HHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHH TESVLRHIDPSRVELIAYQTNDVEDDTTQRLKPLFGEWTQLSKLSREAAAKRIFDDRIDI HHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHE LLDMSGHTAFNRLAVFAMKPAPVQVTWLGFFASTGIEQIDYVLGDRYVLPPEEAHHFIEK EEECCCCHHHHHHEEEEECCCCEEEEEEHHHHHCCHHHHHHHHCCCEECCCHHHHHHHHC PWHLPDGYLCMTPPAHDVAVGALPMLANGFVTFGYLGKLAKVTDDVLDLWARVLREVPGS CCCCCCCEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC RLLIKAHELDRKHAVDATRRRFAGRGLDAERLLLEGGSKRDEYFKTYHRVDIVLSPFPYP EEEEEHHHCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHHHHHHEEEEECCCCCC GGTTTAEALWMGVPVVAMKGDRFLGHICESVLQSAGFGDWVTGDAQGYIAIARALAADRD CCCHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCHH ALATLRAGLREHVLASPMCDAQRFARNFEDALDGMWRVYERDSA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2105307 [H]