BacMap

Definition	Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession	NC_010622
Length	3,479,187

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The map label for this gene is yjjL [H]

Identifier: 186477143

GI number: 186477143

Start: 2686313

End: 2687665

Strand: Direct

Name: yjjL [H]

Synonym: Bphy_2392

Alternate gene names: 186477143

Gene position: 2686313-2687665 (Clockwise)

Preceding gene: 186477129

Following gene: 186477145

Centisome position: 77.21

GC content: 63.12

Gene sequence:

>1353_bases
ATGGAGCAATCCTCTACGGTGCCGCGTGTGCCGGAGTCGGGCAGCAGTGCCGCTCAGAACATCGCTTCCAACGACCGGGC
TTCCCCACGGGTGCGGCGAATTCAGCGGACCGCGCTTGCTCTGCTTCTCCTGAGCGGGGTCATCAATTACATCGACCGCG
CGACGTTGTCTATCGCGAATCCGCTGATCCGGCACGATCTCGGACTCTCCGTCGCGGAAATGGGCCTGTTGCTGTCGGCG
TTTCTATGGGCTTACGCATTCGCGCAACTGCCCGCGGGCGCGTTGGTCGATCGCTTCGGCGCGCGCGTCATGCTGTCCGT
CAGCCTCGCGACGTGGTCGGTGGCCCAGGCGTTCGGCGGTGTGGTGAGCAACTTCAGCCAGTTCTTCGCTGCTCGCATGG
TGCTGGGAATAGGCGAGGCGCCGCAGTTTCCGACGGCCGCCAAAGTCGTTCGCGATTGGTTCGGCAAAAAAGAGCGCGGC
GCCGCCACCGGCATCTGGAACAGTTCGTCGACGCTTGGTACTGCAATATCAGCGCCTTTGCTGACGGTCTTAATGTTGAC
TGTGGGATGGCGATGGATGTTCGGCGTCATGGGAATCGCCGGCCTCCTCGTGGCGCTCGGCTTTTTTATCATGCATCGCG
ACCCGCGTCAGGTCGAGTTGACGCAACGGGAGCGCGCGTATCTGTCCGACGTCGATGGGGAGGCGCAGAGCCGTCCGACA
TGGCGCGAGTGGCGCCGTCTGTTCGAGTTCAGCACTACGTGGGGCATGCTGCTCGGATTCTTCGGCACGATCTACGTCTT
GTGGCTTTACAACGCGTGGTTGCCGTCTTACCTGCAAATGGAACTTCACCTGACTATTGCGAAGTCGGGATGGGTGGCCG
CGGTTCCCTATCTCTTTGGCGTGGTGGGCAGTCTCTCTGGCGGAAAGATTTGCGACGTGCTCGCACGGCGAGGCGTGTCG
GCGATCAACAGCCGGAAGTATCCGATGGCGGCTTCGCTTTTCGGGGTCGCCGTGTTCACGGTACTGACCGGCCTCACGCA
CAATGTGACGCTGGCGGTCGTCTTCATTTCGATCTCGATGTTGCTGCTGTATGTCTCGAGCAGTGCGGCCTGGGCGACCG
CGTCCGTTGCCGCGCCCGCCAATTGCACCGCTTCCATCGGCGCCATGCAGAATTTCGGCGGCTACTTCGGCGGCGCGCTG
GCACCGGTGGTCACGGGCTTCATCGTGCAGCAGACCCACTCGTTCGCGCCCGCGCTGTTCGTCGGAGCGGCCGTTGCCGC
CGTCGCGGTGATCGGCTACTGGTTGCTCGTGCGCGGCCCGATTCCGCCGGTCGCGCTCACTCGCGACGTGTAA

Upstream 100 bases:

>100_bases
GGACACGGGCATATCGTCGCTCAATCCGATGCTGTAATGCGCACGTTTGCATCGGAAACTGGCCCTCGCCGATAGAACAA
AATATTCAGGAGACTTACCC

Downstream 100 bases:

>100_bases
CAGCAAAACAATGCTGCCTCGGCGAGAGTCTGGGCTCTCGCGCCTGCTGTCAGCCGGGTAGTGCGGAAGGCAGCGGGATG
TCATAGCGCCGCGCGCAGGC

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 450; Mature: 450

Protein sequence:

>450_residues
MEQSSTVPRVPESGSSAAQNIASNDRASPRVRRIQRTALALLLLSGVINYIDRATLSIANPLIRHDLGLSVAEMGLLLSA
FLWAYAFAQLPAGALVDRFGARVMLSVSLATWSVAQAFGGVVSNFSQFFAARMVLGIGEAPQFPTAAKVVRDWFGKKERG
AATGIWNSSSTLGTAISAPLLTVLMLTVGWRWMFGVMGIAGLLVALGFFIMHRDPRQVELTQRERAYLSDVDGEAQSRPT
WREWRRLFEFSTTWGMLLGFFGTIYVLWLYNAWLPSYLQMELHLTIAKSGWVAAVPYLFGVVGSLSGGKICDVLARRGVS
AINSRKYPMAASLFGVAVFTVLTGLTHNVTLAVVFISISMLLLYVSSSAAWATASVAAPANCTASIGAMQNFGGYFGGAL
APVVTGFIVQQTHSFAPALFVGAAVAAVAVIGYWLLVRGPIPPVALTRDV

Sequences:

>Translated_450_residues
MEQSSTVPRVPESGSSAAQNIASNDRASPRVRRIQRTALALLLLSGVINYIDRATLSIANPLIRHDLGLSVAEMGLLLSA
FLWAYAFAQLPAGALVDRFGARVMLSVSLATWSVAQAFGGVVSNFSQFFAARMVLGIGEAPQFPTAAKVVRDWFGKKERG
AATGIWNSSSTLGTAISAPLLTVLMLTVGWRWMFGVMGIAGLLVALGFFIMHRDPRQVELTQRERAYLSDVDGEAQSRPT
WREWRRLFEFSTTWGMLLGFFGTIYVLWLYNAWLPSYLQMELHLTIAKSGWVAAVPYLFGVVGSLSGGKICDVLARRGVS
AINSRKYPMAASLFGVAVFTVLTGLTHNVTLAVVFISISMLLLYVSSSAAWATASVAAPANCTASIGAMQNFGGYFGGAL
APVVTGFIVQQTHSFAPALFVGAAVAAVAVIGYWLLVRGPIPPVALTRDV
>Mature_450_residues
MEQSSTVPRVPESGSSAAQNIASNDRASPRVRRIQRTALALLLLSGVINYIDRATLSIANPLIRHDLGLSVAEMGLLLSA
FLWAYAFAQLPAGALVDRFGARVMLSVSLATWSVAQAFGGVVSNFSQFFAARMVLGIGEAPQFPTAAKVVRDWFGKKERG
AATGIWNSSSTLGTAISAPLLTVLMLTVGWRWMFGVMGIAGLLVALGFFIMHRDPRQVELTQRERAYLSDVDGEAQSRPT
WREWRRLFEFSTTWGMLLGFFGTIYVLWLYNAWLPSYLQMELHLTIAKSGWVAAVPYLFGVVGSLSGGKICDVLARRGVS
AINSRKYPMAASLFGVAVFTVLTGLTHNVTLAVVFISISMLLLYVSSSAAWATASVAAPANCTASIGAMQNFGGYFGGAL
APVVTGFIVQQTHSFAPALFVGAAVAAVAVIGYWLLVRGPIPPVALTRDV

Specific function: Responsible for the transport of L-galactonate from the periplasm across the inner membrane (Probable). Is essential for growth on L-galactonate as the sole carbon source [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. Phthalate permease family [H]

Homologues:

Organism=Homo sapiens, GI154350196, Length=376, Percent_Identity=25.531914893617, Blast_Score=102, Evalue=7e-22,
Organism=Homo sapiens, GI6912666, Length=382, Percent_Identity=22.5130890052356, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI9945322, Length=396, Percent_Identity=22.4747474747475, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI4885441, Length=376, Percent_Identity=23.1382978723404, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI9966811, Length=417, Percent_Identity=21.3429256594724, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI21322234, Length=377, Percent_Identity=19.893899204244, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI5031955, Length=263, Percent_Identity=23.574144486692, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI256219598, Length=401, Percent_Identity=23.9401496259352, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI4503847, Length=401, Percent_Identity=23.9401496259352, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI256219483, Length=401, Percent_Identity=23.9401496259352, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI256219543, Length=423, Percent_Identity=22.9314420803783, Blast_Score=70, Evalue=5e-12,
Organism=Homo sapiens, GI148743791, Length=351, Percent_Identity=21.9373219373219, Blast_Score=69, Evalue=7e-12,
Organism=Homo sapiens, GI154800443, Length=289, Percent_Identity=25.2595155709343, Blast_Score=65, Evalue=9e-11,
Organism=Escherichia coli, GI2367379, Length=444, Percent_Identity=43.018018018018, Blast_Score=368, Evalue=1e-103,
Organism=Escherichia coli, GI87082320, Length=427, Percent_Identity=33.9578454332553, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1789515, Length=446, Percent_Identity=33.1838565022422, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789152, Length=433, Percent_Identity=31.1778290993072, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI2367193, Length=334, Percent_Identity=25.4491017964072, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI1788573, Length=398, Percent_Identity=22.6130653266332, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87082071, Length=209, Percent_Identity=28.2296650717703, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17535049, Length=422, Percent_Identity=23.9336492890995, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI193205400, Length=373, Percent_Identity=24.1286863270777, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI115533556, Length=446, Percent_Identity=24.8878923766816, Blast_Score=84, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI115533554, Length=425, Percent_Identity=25.1764705882353, Blast_Score=83, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17552542, Length=300, Percent_Identity=24, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI32565914, Length=382, Percent_Identity=23.0366492146597, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997452, Length=301, Percent_Identity=22.9235880398671, Blast_Score=76, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560030, Length=281, Percent_Identity=25.2669039145907, Blast_Score=75, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17566884, Length=351, Percent_Identity=23.3618233618234, Blast_Score=72, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17554962, Length=284, Percent_Identity=21.1267605633803, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25141316, Length=397, Percent_Identity=22.1662468513854, Blast_Score=69, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI25141318, Length=397, Percent_Identity=22.1662468513854, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI25141341, Length=398, Percent_Identity=22.6130653266332, Blast_Score=69, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI32565916, Length=234, Percent_Identity=22.6495726495727, Blast_Score=68, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193209775, Length=258, Percent_Identity=22.8682170542636, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71991448, Length=377, Percent_Identity=23.6074270557029, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71991453, Length=377, Percent_Identity=23.6074270557029, Blast_Score=66, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI86561091, Length=271, Percent_Identity=22.5092250922509, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17554148, Length=300, Percent_Identity=21, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24648416, Length=473, Percent_Identity=22.6215644820296, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI21356189, Length=473, Percent_Identity=22.6215644820296, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI20130167, Length=437, Percent_Identity=21.7391304347826, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI28573299, Length=320, Percent_Identity=25, Blast_Score=93, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24639764, Length=358, Percent_Identity=24.8603351955307, Blast_Score=92, Evalue=8e-19,
Organism=Drosophila melanogaster, GI24583789, Length=378, Percent_Identity=24.0740740740741, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24584153, Length=352, Percent_Identity=23.8636363636364, Blast_Score=87, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24654215, Length=309, Percent_Identity=25.2427184466019, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19922400, Length=309, Percent_Identity=25.2427184466019, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24580790, Length=350, Percent_Identity=21.7142857142857, Blast_Score=79, Evalue=5e-15,
Organism=Drosophila melanogaster, GI24641682, Length=300, Percent_Identity=24, Blast_Score=78, Evalue=2e-14,
Organism=Drosophila melanogaster, GI19920686, Length=426, Percent_Identity=21.830985915493, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24656866, Length=416, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI45550478, Length=416, Percent_Identity=26.9230769230769, Blast_Score=75, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24656861, Length=416, Percent_Identity=26.9230769230769, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45550460, Length=449, Percent_Identity=24.2761692650334, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24653727, Length=375, Percent_Identity=22.1333333333333, Blast_Score=72, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24655255, Length=370, Percent_Identity=25.1351351351351, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654041, Length=281, Percent_Identity=25.6227758007117, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20130135, Length=431, Percent_Identity=22.5058004640371, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24654037, Length=281, Percent_Identity=25.6227758007117, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI20129235, Length=382, Percent_Identity=22.7748691099476, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17864456, Length=281, Percent_Identity=25.6227758007117, Blast_Score=69, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24654039, Length=281, Percent_Identity=25.6227758007117, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24655271, Length=412, Percent_Identity=22.8155339805825, Blast_Score=69, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24654044, Length=186, Percent_Identity=26.8817204301075, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI62484226, Length=289, Percent_Identity=22.4913494809689, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 48325; Mature: 48325

Theoretical pI: Translated: 10.38; Mature: 10.38

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQSSTVPRVPESGSSAAQNIASNDRASPRVRRIQRTALALLLLSGVINYIDRATLSIAN
CCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIRHDLGLSVAEMGLLLSAFLWAYAFAQLPAGALVDRFGARVMLSVSLATWSVAQAFGG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
VVSNFSQFFAARMVLGIGEAPQFPTAAKVVRDWFGKKERGAATGIWNSSSTLGTAISAPL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
LTVLMLTVGWRWMFGVMGIAGLLVALGFFIMHRDPRQVELTQRERAYLSDVDGEAQSRPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
WREWRRLFEFSTTWGMLLGFFGTIYVLWLYNAWLPSYLQMELHLTIAKSGWVAAVPYLFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCCCHHHHHHHHH
VVGSLSGGKICDVLARRGVSAINSRKYPMAASLFGVAVFTVLTGLTHNVTLAVVFISISM
HHHCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLLYVSSSAAWATASVAAPANCTASIGAMQNFGGYFGGALAPVVTGFIVQQTHSFAPALF
HHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGAAVAAVAVIGYWLLVRGPIPPVALTRDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MEQSSTVPRVPESGSSAAQNIASNDRASPRVRRIQRTALALLLLSGVINYIDRATLSIAN
CCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLIRHDLGLSVAEMGLLLSAFLWAYAFAQLPAGALVDRFGARVMLSVSLATWSVAQAFGG
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHH
VVSNFSQFFAARMVLGIGEAPQFPTAAKVVRDWFGKKERGAATGIWNSSSTLGTAISAPL
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH
LTVLMLTVGWRWMFGVMGIAGLLVALGFFIMHRDPRQVELTQRERAYLSDVDGEAQSRPT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
WREWRRLFEFSTTWGMLLGFFGTIYVLWLYNAWLPSYLQMELHLTIAKSGWVAAVPYLFG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEEEEEEECCCCHHHHHHHHH
VVGSLSGGKICDVLARRGVSAINSRKYPMAASLFGVAVFTVLTGLTHNVTLAVVFISISM
HHHCCCCCHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
LLLYVSSSAAWATASVAAPANCTASIGAMQNFGGYFGGALAPVVTGFIVQQTHSFAPALF
HHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VGAAVAAVAVIGYWLLVRGPIPPVALTRDV
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]