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The map label for this gene is yqgF [C]

Identifier: 186477077

GI number: 186477077

Start: 2610405

End: 2610860

Strand: Reverse

Name: yqgF [C]

Synonym: Bphy_2326

Alternate gene names: 186477077

Gene position: 2610860-2610405 (Counterclockwise)

Preceding gene: 186477078

Following gene: 186477076

Centisome position: 75.04

GC content: 61.4

Gene sequence:

>456_bases
ATGAGCGGTGTGGCCGGACGTGAGGCGACGCTGCTTGCGTTCGACTACGGCGAAAAGCGGATTGGCGTTGCCGTCGGCAA
TTCGCTCACGCGCAGCGCCCGGCCGCTCGTCGTCTTGCAGAACCGCAATCGCGAATATCGCTTCGAAGCCGTCGGCAAGC
TGATCGACGAATGGAAGCCGGACGCGCTCGTCGTCGGTTTGCCCATGCATCCCGACGGCACGCCACACGAAAGAACCCAG
CTCGCGAAGCGCTTCGGCAACCAGTTGAACGGGCGCTTCAATCTTCCCGTCACATGGATCGACGAACGTTATTCGTCGGT
TGAGGCGGAAGCGGGCATTCGCAGCGGGACGCGGCAGGCGGGCATGCTCGACGCAGAAGCCGCGTGCATCATTCTTCAGC
AATATCTGGACGGACTGAGTCTGGAAGGACCAAGCGACGATCATGAGTTCCGTTGA

Upstream 100 bases:

>100_bases
CAAAGATCGTCTTCGACGTGCCCGCCGAAAACCGTTTCGAAGCGGCGCTCGCGCTGCTCGGCATCTCGTCTTCGATGCTC
TCCGGCGACGCAGGGCACGC

Downstream 100 bases:

>100_bases
CGCCGAGGCGCTCTACCGCGCCGTGCTCGAACAGATTCGCACCGCATACGGCGACGCGCTGGGCGGTTCCGATGGCGCGG
TGCTCGCCGGCATCTATAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MSGVAGREATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPDGTPHERTQ
LAKRFGNQLNGRFNLPVTWIDERYSSVEAEAGIRSGTRQAGMLDAEAACIILQQYLDGLSLEGPSDDHEFR

Sequences:

>Translated_151_residues
MSGVAGREATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPDGTPHERTQ
LAKRFGNQLNGRFNLPVTWIDERYSSVEAEAGIRSGTRQAGMLDAEAACIILQQYLDGLSLEGPSDDHEFR
>Mature_150_residues
SGVAGREATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKPDALVVGLPMHPDGTPHERTQL
AKRFGNQLNGRFNLPVTWIDERYSSVEAEAGIRSGTRQAGMLDAEAACIILQQYLDGLSLEGPSDDHEFR

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=132, Percent_Identity=42.4242424242424, Blast_Score=109, Evalue=7e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_BURP8 (B2JFD3)

Other databases:

- EMBL:   CP001043
- RefSeq:   YP_001858547.1
- ProteinModelPortal:   B2JFD3
- SMR:   B2JFD3
- GeneID:   6243812
- GenomeReviews:   CP001043_GR
- KEGG:   bph:Bphy_2326
- HOGENOM:   HBG607919
- OMA:   ESYFENQ
- ProtClustDB:   PRK00109
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 16740; Mature: 16609

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVAGREATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKP
CCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHERTQLAKRFGNQLNGRFNLPVTWIDERYSSVEAEAGIRSGTRQA
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEECHHHHHHHHHHCCCCCCCCC
GMLDAEAACIILQQYLDGLSLEGPSDDHEFR
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SGVAGREATLLAFDYGEKRIGVAVGNSLTRSARPLVVLQNRNREYRFEAVGKLIDEWKP
CCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHERTQLAKRFGNQLNGRFNLPVTWIDERYSSVEAEAGIRSGTRQA
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEECHHHHHHHHHHCCCCCCCCC
GMLDAEAACIILQQYLDGLSLEGPSDDHEFR
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA