| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476592
Identifier: 186476592
GI number: 186476592
Start: 2096448
End: 2097863
Strand: Reverse
Name: 186476592
Synonym: Bphy_1835
Alternate gene names: NA
Gene position: 2097863-2096448 (Counterclockwise)
Preceding gene: 186476593
Following gene: 186476591
Centisome position: 60.3
GC content: 65.61
Gene sequence:
>1416_bases GTGAATACCGTCACCGCGCAAAGCGCCGTCAGTGCGGCGAAGCCGCGTCAATCGAACCCGTTCGGCAATCTGGGCGCGTG GCGGCGCCTCGTCGCGCCCGCAGTGTCGCGGCCGTTTTCCATCGTCGAGACGATCGTATTCGTCGGCGTGGTCTTCGCAG TGTGCTACGGGCTCGATCGCGACGATCCGTTCCTGCTGCACGCGGGTTTTCCGTGGCTGTGGTTCGCGCCACTCGTCGTT GCGCTGCGCTACGGCACGCTGCTCGGCCTGCTCGGCTGCGCGATGCTGGTCGGTTCGTATCAGGTCTTGACGCAGCTGCT GCATCAGGGCGGCGCGGCCGCGTGGCCGACGCTGTTCTTCACGGGGGGCGTGCTGCAGACCATCGTCGCGGGTCACTTCG GCGATACGTGGGGCAGCCGAGCGCAGCGCGCGAACGCGATCAACGACTACCTGAACGACCGTCTCGTCGCGATCACCAAC AGCCACTATCTGATGCGCTTGTCGCATGAGCGGCTCGAAAAGGACTTGCTGACGAAGCCGACCACGCTGCGCGACTCGAT CACCGAGCTGCGCCGGATCTCCGTCGCGCACGGTCTCGACACGGCAACGCATCGTTCGTCCGACATCCCGGGCGCGCGGG AACTGCTCGAATTCGTCGCGCAGGCCTGCCAGCTCGAAATGGCCGCTCTGTATCCCGTGCATGACGACAAGGTCGGGCGT CAGGCGCTCGCGCGTGTCGGCGACACATTCGATTTCGATCCGCGCGACGACCTCGTTCAGCGCGCGCTCGAAACGCGCGC GGTCGCGCATCTGAAGAGCGAGGACCGGCCCGTGGCGAACACGCGTCTGCTCGTCTGTGCGCCGCTCATTTCCGCCGACG GCCGCATGCTGGCGATGCTCGCGATCCGCCGCATGCCGTTCCTGTCGCTGAACTTCGACAACCTGCAACTGCTGCTCGTG CTGCTCGGCTATTACGCGGACGGTGTCGAGCATTCGCAGCAGGTGCGCGACATCCTCGAGGCCGTGCCCGATTGCCCGTA TGAATTCGCGCTCGACGTCGGCCGTCTCACGCGTCTCGAACGCTCGGCGGGCATTACGTCGTCGCTCGTGGCGCTCGTGT TCCCGCATGACGATGCCGGCGATTCGTTCTTCGAACATGTGATGCGCCGCCGTCGGGCGCTCGATCTGATGTGGCCGGTG AAAGCAGCAGGGCGGTCGGTGCTGCTGAACCTGATGCCCGCGACGGATGCAACGGGCGTCGACGGCTATCTCGCGCGGAT CGAATCGAGCCTGCGCTCACAGTTCAATCTCGACCTTGAAGGCGCGCGTATCGGCGTGCATACGCTGCATCTGGGCGGCG ACGAGCCGGGTCCGGCGCTCAAGCGTCTTCTCATGCGTAGCGGTCTCGATGGATAA
Upstream 100 bases:
>100_bases GGCTGATGCGCGGGCGCGCAAGCACGGGCGTGAGCATCGCGCATCGTTGCGACGCACGCTGCAACACCCCAGCAATTCGA CACGTGATGAGGAGTCGGCT
Downstream 100 bases:
>100_bases CACCCAGGCAAACCGCCGGGCAGGCGGCTCCATCGCTTTCATGCTGTCGATGTTCGCGGCACCCGGCATCGCCATCGTTG CATGCCTGCAGGGCGTGGGC
Product: putative transmembrane protein
Products: NA
Alternate protein names: Polysaccharide Transporter Component Transmembrane Protein
Number of amino acids: Translated: 471; Mature: 471
Protein sequence:
>471_residues MNTVTAQSAVSAAKPRQSNPFGNLGAWRRLVAPAVSRPFSIVETIVFVGVVFAVCYGLDRDDPFLLHAGFPWLWFAPLVV ALRYGTLLGLLGCAMLVGSYQVLTQLLHQGGAAAWPTLFFTGGVLQTIVAGHFGDTWGSRAQRANAINDYLNDRLVAITN SHYLMRLSHERLEKDLLTKPTTLRDSITELRRISVAHGLDTATHRSSDIPGARELLEFVAQACQLEMAALYPVHDDKVGR QALARVGDTFDFDPRDDLVQRALETRAVAHLKSEDRPVANTRLLVCAPLISADGRMLAMLAIRRMPFLSLNFDNLQLLLV LLGYYADGVEHSQQVRDILEAVPDCPYEFALDVGRLTRLERSAGITSSLVALVFPHDDAGDSFFEHVMRRRRALDLMWPV KAAGRSVLLNLMPATDATGVDGYLARIESSLRSQFNLDLEGARIGVHTLHLGGDEPGPALKRLLMRSGLDG
Sequences:
>Translated_471_residues MNTVTAQSAVSAAKPRQSNPFGNLGAWRRLVAPAVSRPFSIVETIVFVGVVFAVCYGLDRDDPFLLHAGFPWLWFAPLVV ALRYGTLLGLLGCAMLVGSYQVLTQLLHQGGAAAWPTLFFTGGVLQTIVAGHFGDTWGSRAQRANAINDYLNDRLVAITN SHYLMRLSHERLEKDLLTKPTTLRDSITELRRISVAHGLDTATHRSSDIPGARELLEFVAQACQLEMAALYPVHDDKVGR QALARVGDTFDFDPRDDLVQRALETRAVAHLKSEDRPVANTRLLVCAPLISADGRMLAMLAIRRMPFLSLNFDNLQLLLV LLGYYADGVEHSQQVRDILEAVPDCPYEFALDVGRLTRLERSAGITSSLVALVFPHDDAGDSFFEHVMRRRRALDLMWPV KAAGRSVLLNLMPATDATGVDGYLARIESSLRSQFNLDLEGARIGVHTLHLGGDEPGPALKRLLMRSGLDG >Mature_471_residues MNTVTAQSAVSAAKPRQSNPFGNLGAWRRLVAPAVSRPFSIVETIVFVGVVFAVCYGLDRDDPFLLHAGFPWLWFAPLVV ALRYGTLLGLLGCAMLVGSYQVLTQLLHQGGAAAWPTLFFTGGVLQTIVAGHFGDTWGSRAQRANAINDYLNDRLVAITN SHYLMRLSHERLEKDLLTKPTTLRDSITELRRISVAHGLDTATHRSSDIPGARELLEFVAQACQLEMAALYPVHDDKVGR QALARVGDTFDFDPRDDLVQRALETRAVAHLKSEDRPVANTRLLVCAPLISADGRMLAMLAIRRMPFLSLNFDNLQLLLV LLGYYADGVEHSQQVRDILEAVPDCPYEFALDVGRLTRLERSAGITSSLVALVFPHDDAGDSFFEHVMRRRRALDLMWPV KAAGRSVLLNLMPATDATGVDGYLARIESSLRSQFNLDLEGARIGVHTLHLGGDEPGPALKRLLMRSGLDG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51797; Mature: 51797
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: PS00237 G_PROTEIN_RECEP_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTVTAQSAVSAAKPRQSNPFGNLGAWRRLVAPAVSRPFSIVETIVFVGVVFAVCYGLDR CCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC DDPFLLHAGFPWLWFAPLVVALRYGTLLGLLGCAMLVGSYQVLTQLLHQGGAAAWPTLFF CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHH TGGVLQTIVAGHFGDTWGSRAQRANAINDYLNDRLVAITNSHYLMRLSHERLEKDLLTKP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC TTLRDSITELRRISVAHGLDTATHRSSDIPGARELLEFVAQACQLEMAALYPVHDDKVGR CHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QALARVGDTFDFDPRDDLVQRALETRAVAHLKSEDRPVANTRLLVCAPLISADGRMLAML HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCHHHHHH AIRRMPFLSLNFDNLQLLLVLLGYYADGVEHSQQVRDILEAVPDCPYEFALDVGRLTRLE HHHHCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RSAGITSSLVALVFPHDDAGDSFFEHVMRRRRALDLMWPVKAAGRSVLLNLMPATDATGV HHCCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHEEHEEECCCCCCCC DGYLARIESSLRSQFNLDLEGARIGVHTLHLGGDEPGPALKRLLMRSGLDG HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCC >Mature Secondary Structure MNTVTAQSAVSAAKPRQSNPFGNLGAWRRLVAPAVSRPFSIVETIVFVGVVFAVCYGLDR CCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCC DDPFLLHAGFPWLWFAPLVVALRYGTLLGLLGCAMLVGSYQVLTQLLHQGGAAAWPTLFF CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHH TGGVLQTIVAGHFGDTWGSRAQRANAINDYLNDRLVAITNSHYLMRLSHERLEKDLLTKP HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCC TTLRDSITELRRISVAHGLDTATHRSSDIPGARELLEFVAQACQLEMAALYPVHDDKVGR CHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHH QALARVGDTFDFDPRDDLVQRALETRAVAHLKSEDRPVANTRLLVCAPLISADGRMLAML HHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHCCCCHHHHHH AIRRMPFLSLNFDNLQLLLVLLGYYADGVEHSQQVRDILEAVPDCPYEFALDVGRLTRLE HHHHCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH RSAGITSSLVALVFPHDDAGDSFFEHVMRRRRALDLMWPVKAAGRSVLLNLMPATDATGV HHCCCHHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHCCHHEEHEEECCCCCCCC DGYLARIESSLRSQFNLDLEGARIGVHTLHLGGDEPGPALKRLLMRSGLDG HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA