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The map label for this gene is bphB [H]

Identifier: 186476518

GI number: 186476518

Start: 2009091

End: 2010782

Strand: Reverse

Name: bphB [H]

Synonym: Bphy_1760

Alternate gene names: 186476518

Gene position: 2010782-2009091 (Counterclockwise)

Preceding gene: 186476523

Following gene: 186476515

Centisome position: 57.79

GC content: 66.37

Gene sequence:

>1692_bases
ATGAGACTGACGACCAAAGGCCTGCTTCTGATTGCCATCCCCGCCGTCTTCGAACTCGCATTGCTGTCGGGGCTGGTCAG
GGCGCAGGCGGACGCCGAGCAGGCCGAGCGCTGGAGCATGCACAGCGAGGATGTGCTGCTTCAGACGGCCAACATCCTGG
CTCCCGTGCTGCTCCAGTCCGTGCGGCTGCGCGGCGCGGCGGTGAGCGGCTCGCTCGATGTCTCGACGCCCGTCACGTTC
TGGATGGACGTCGATCGGCGCATCGATCGCCTCGCCGAACTGGTTGCTGACAATCCCGCCCAGGTCGAGCGCGCCGCGCA
GATCCGCCAATCCGTGCAGGCATACCGGCAATGGTCGGACCGGGTGCAAGATCTACTTCATTCCCGTCGGCGGCAAGATG
TCCTGCAGCGTTTTCGCGATCTGGCGGCAACCGACGTGCTCGACAGCTTTCGCACGCAGATCGCCGCGTTCCAGGCGCAA
GAGCGCCTGCTCGACTCGGTGCGCTCGGCTCAGGCCGCGGCGGCGCGTGAGCGGCAGCAATCGCTGATCGTCGCGGCCGT
GATTGGCTCGCTGGCATTCGTCGCCATCGCATTCTGGCTCTTCGCGCGCGGTGTGCGTGGCCGGCTGGCGTTGCTGACGG
ACAACGCCAGCCGGCTCGCGAGCAACGAGCCGCTCGCGCCGCTTACACGCGGTAACGATGAGATCGCGCGGCTCGATCTG
ACGCTGCATGTCGCGAGCCGGCGCTTGCTCGAAGCGGAGCGCCAGCAGGCGCGCTTCCAGTCCGATCTGGGCCGTCGTGC
CGCAGAACTCGCGCAAACCAACGAAACGCTGCGTCAGCAGACGCAGGAAAACGAGACCTTCATTTACAGCGTGTCGCACG
ACCTGCGTGCGCCGCTCGTCAATCTGCAAGGTTTTTCGAAGGAACTGATCCATGCGTGCGACGATCTGCGCACGGCATTG
CGTCAGGCGTCACTGTCTGCGCAGCAGCGGCGGCATGTCGAGCGGCTGATCGACGAGGAGATCGGCGAAGCGCTGCATTT
CCTGCAGACAGCCGTGCTGCGCGCATCGCACATCATCGATGCGCTGCTGCGGCTGTCGCGCGTCGGCCGTGTCGAGTATC
GCAGGCAGCAGGTGGATGTGCGCGACATCGTGCAGCGGGTTGTCGACGCAATGCAGGCCACCATCCGCGACCGCAGCGCG
CGCGTGATCGTTCAGCCGCTGCCGCCCGTGTGGGGCGACCCGACAGCGCTCGAACAGGTGTTCGCGAACCTGATCGGCAA
CGCGATCAATTATCTGAGTCCGGAACGTACGGGCATCGTCGAAATCGGCACGGCGCCCGCGCCGCCCGGGGTGCAGACGC
TGCGCATTTTCTATGTGAAGGACAACGGCCTCGGTATTCCAGAGGTCGCGATGCCTCGCCTGTTCAATGCGTTCCAGCGC
CTGCACGGCAATGTCGCGTCAGGCGAGGGCATCGGGCTTGCGCTGGTGCGGCGGATGGTCGAGCGGCACGGCGGCCGCGT
GTGGGCTGAGTCGACGGAGGATGTGGGTACGACGTTCTATCTGTCGTTGCCCGACGCGGCGGCGCCGTCGCACGACGCCG
AGCGCGGCGAAATGCCGGACCAAGGACGCGACGAAGCGCACGACACGGCGACGACAGCCAACGCGCAGACCTTGCGGGCC
GACGCCCGCTAG

Upstream 100 bases:

>100_bases
AAGGCCCACGTCGGAACCGTTTTTGTCAATGGCGGCAATCGCCGACATAATGTGCCGTCCCGGCGCGACCCGCCGGCTTC
CGACTACCCCCGGCGCGCGC

Downstream 100 bases:

>100_bases
CAGGATTGTGCCGCCGCGCCCGGCCGGGTCGCGGAAATTTTCAGGGAGCAGAAAACAGGCGGCGTGGCTTCAGCAGCCTG
CGGCCGCGGATCGACCAGTA

Product: histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MRLTTKGLLLIAIPAVFELALLSGLVRAQADAEQAERWSMHSEDVLLQTANILAPVLLQSVRLRGAAVSGSLDVSTPVTF
WMDVDRRIDRLAELVADNPAQVERAAQIRQSVQAYRQWSDRVQDLLHSRRRQDVLQRFRDLAATDVLDSFRTQIAAFQAQ
ERLLDSVRSAQAAAARERQQSLIVAAVIGSLAFVAIAFWLFARGVRGRLALLTDNASRLASNEPLAPLTRGNDEIARLDL
TLHVASRRLLEAERQQARFQSDLGRRAAELAQTNETLRQQTQENETFIYSVSHDLRAPLVNLQGFSKELIHACDDLRTAL
RQASLSAQQRRHVERLIDEEIGEALHFLQTAVLRASHIIDALLRLSRVGRVEYRRQQVDVRDIVQRVVDAMQATIRDRSA
RVIVQPLPPVWGDPTALEQVFANLIGNAINYLSPERTGIVEIGTAPAPPGVQTLRIFYVKDNGLGIPEVAMPRLFNAFQR
LHGNVASGEGIGLALVRRMVERHGGRVWAESTEDVGTTFYLSLPDAAAPSHDAERGEMPDQGRDEAHDTATTANAQTLRA
DAR

Sequences:

>Translated_563_residues
MRLTTKGLLLIAIPAVFELALLSGLVRAQADAEQAERWSMHSEDVLLQTANILAPVLLQSVRLRGAAVSGSLDVSTPVTF
WMDVDRRIDRLAELVADNPAQVERAAQIRQSVQAYRQWSDRVQDLLHSRRRQDVLQRFRDLAATDVLDSFRTQIAAFQAQ
ERLLDSVRSAQAAAARERQQSLIVAAVIGSLAFVAIAFWLFARGVRGRLALLTDNASRLASNEPLAPLTRGNDEIARLDL
TLHVASRRLLEAERQQARFQSDLGRRAAELAQTNETLRQQTQENETFIYSVSHDLRAPLVNLQGFSKELIHACDDLRTAL
RQASLSAQQRRHVERLIDEEIGEALHFLQTAVLRASHIIDALLRLSRVGRVEYRRQQVDVRDIVQRVVDAMQATIRDRSA
RVIVQPLPPVWGDPTALEQVFANLIGNAINYLSPERTGIVEIGTAPAPPGVQTLRIFYVKDNGLGIPEVAMPRLFNAFQR
LHGNVASGEGIGLALVRRMVERHGGRVWAESTEDVGTTFYLSLPDAAAPSHDAERGEMPDQGRDEAHDTATTANAQTLRA
DAR
>Mature_563_residues
MRLTTKGLLLIAIPAVFELALLSGLVRAQADAEQAERWSMHSEDVLLQTANILAPVLLQSVRLRGAAVSGSLDVSTPVTF
WMDVDRRIDRLAELVADNPAQVERAAQIRQSVQAYRQWSDRVQDLLHSRRRQDVLQRFRDLAATDVLDSFRTQIAAFQAQ
ERLLDSVRSAQAAAARERQQSLIVAAVIGSLAFVAIAFWLFARGVRGRLALLTDNASRLASNEPLAPLTRGNDEIARLDL
TLHVASRRLLEAERQQARFQSDLGRRAAELAQTNETLRQQTQENETFIYSVSHDLRAPLVNLQGFSKELIHACDDLRTAL
RQASLSAQQRRHVERLIDEEIGEALHFLQTAVLRASHIIDALLRLSRVGRVEYRRQQVDVRDIVQRVVDAMQATIRDRSA
RVIVQPLPPVWGDPTALEQVFANLIGNAINYLSPERTGIVEIGTAPAPPGVQTLRIFYVKDNGLGIPEVAMPRLFNAFQR
LHGNVASGEGIGLALVRRMVERHGGRVWAESTEDVGTTFYLSLPDAAAPSHDAERGEMPDQGRDEAHDTATTANAQTLRA
DAR

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI48994928, Length=301, Percent_Identity=25.2491694352159, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1789149, Length=246, Percent_Identity=26.4227642276423, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1786600, Length=247, Percent_Identity=28.7449392712551, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788393, Length=311, Percent_Identity=25.7234726688103, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786912, Length=298, Percent_Identity=26.1744966442953, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI145693157, Length=273, Percent_Identity=26.007326007326, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081816, Length=441, Percent_Identity=24.2630385487528, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1790436, Length=241, Percent_Identity=26.1410788381743, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790861, Length=261, Percent_Identity=27.2030651340996, Blast_Score=65, Evalue=9e-12,
Organism=Escherichia coli, GI1786783, Length=245, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788713, Length=245, Percent_Identity=25.3061224489796, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 62563; Mature: 62563

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLTTKGLLLIAIPAVFELALLSGLVRAQADAEQAERWSMHSEDVLLQTANILAPVLLQS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRLRGAAVSGSLDVSTPVTFWMDVDRRIDRLAELVADNPAQVERAAQIRQSVQAYRQWSD
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RVQDLLHSRRRQDVLQRFRDLAATDVLDSFRTQIAAFQAQERLLDSVRSAQAAAARERQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIVAAVIGSLAFVAIAFWLFARGVRGRLALLTDNASRLASNEPLAPLTRGNDEIARLDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEH
TLHVASRRLLEAERQQARFQSDLGRRAAELAQTNETLRQQTQENETFIYSVSHDLRAPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHH
NLQGFSKELIHACDDLRTALRQASLSAQQRRHVERLIDEEIGEALHFLQTAVLRASHIID
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLRLSRVGRVEYRRQQVDVRDIVQRVVDAMQATIRDRSARVIVQPLPPVWGDPTALEQV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
FANLIGNAINYLSPERTGIVEIGTAPAPPGVQTLRIFYVKDNGLGIPEVAMPRLFNAFQR
HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
LHGNVASGEGIGLALVRRMVERHGGRVWAESTEDVGTTFYLSLPDAAAPSHDAERGEMPD
HCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
QGRDEAHDTATTANAQTLRADAR
CCCCHHHHHHHCCCHHHHCCCCC
>Mature Secondary Structure
MRLTTKGLLLIAIPAVFELALLSGLVRAQADAEQAERWSMHSEDVLLQTANILAPVLLQS
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
VRLRGAAVSGSLDVSTPVTFWMDVDRRIDRLAELVADNPAQVERAAQIRQSVQAYRQWSD
HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
RVQDLLHSRRRQDVLQRFRDLAATDVLDSFRTQIAAFQAQERLLDSVRSAQAAAARERQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SLIVAAVIGSLAFVAIAFWLFARGVRGRLALLTDNASRLASNEPLAPLTRGNDEIARLDL
HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEH
TLHVASRRLLEAERQQARFQSDLGRRAAELAQTNETLRQQTQENETFIYSVSHDLRAPLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHH
NLQGFSKELIHACDDLRTALRQASLSAQQRRHVERLIDEEIGEALHFLQTAVLRASHIID
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLRLSRVGRVEYRRQQVDVRDIVQRVVDAMQATIRDRSARVIVQPLPPVWGDPTALEQV
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH
FANLIGNAINYLSPERTGIVEIGTAPAPPGVQTLRIFYVKDNGLGIPEVAMPRLFNAFQR
HHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
LHGNVASGEGIGLALVRRMVERHGGRVWAESTEDVGTTFYLSLPDAAAPSHDAERGEMPD
HCCCCCCCCCHHHHHHHHHHHHCCCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
QGRDEAHDTATTANAQTLRADAR
CCCCHHHHHHHCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]