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The map label for this gene is ywhC [H]

Identifier: 186476188

GI number: 186476188

Start: 1610400

End: 1611062

Strand: Reverse

Name: ywhC [H]

Synonym: Bphy_1430

Alternate gene names: 186476188

Gene position: 1611062-1610400 (Counterclockwise)

Preceding gene: 186476189

Following gene: 186476187

Centisome position: 46.31

GC content: 62.59

Gene sequence:

>663_bases
ATGGATTCCTCCCTGATACAGACCATCGTTGTCTACGCGTTGCCTGTCATTTTCGCGATCACGCTGCACGAGGCGGCTCA
CGGCTATGTCGCGCGCATGCTCGGCGACAACACAGCGTATGTGCTCGGCCGGGTGTCGTTCAATCCGATGCGGCACATCG
ACCCGATCGGCACCATCCTGATTCCGTTGGTGCTTTACTTCGCGACGAGCGGCGCGTTCATGTTCGGCTACGCGAAGCCG
GTGCCCGTCGCGTTCGGCAATCTGCGCAATCCTCGTTGGGGTTCGCTGTGGGTGGCGCTCGCGGGTCCGTTGTGCAATTT
CGTGCAGGCGCTGCTCTGGGGCGTGTTCGGCGTGGCGCTGGCCGCGCTCAACGTCGACGAACCATTCTTCACGCGCATGG
CGCGCGCCGGTGTGTTCGTGAATCTGGTGCTCGGCGTGCTGAACCTGTTTCCGTTGCCTCCCCTCGACGGCGGGCGCGTG
CTGACGGCGCTGTTGCCCGTGCGCCCGGCGATGATGCTCGCGCGCCTCGAACCGTATGGCTTTTTTATCGTGATGGCGCT
CGTGATGACGGGCACGCTGACGCGTTTCTGGCTGAGTCCGCTCGTGAATATCGGCTACGCGGCAGTGACGGCTATCCTGA
CTCCCCTCATTTCGCTTCTATAA

Upstream 100 bases:

>100_bases
CGAGGCTCGCTTGCGCCGTTCGGTCTCGAAGAGACGGCCTAGACGCGACATGAGCGAAAGCCGACAGAGCCGCAAGGCGC
CGTTGTTACAATAGAGCGAT

Downstream 100 bases:

>100_bases
ATCAAAACCATGTACCCCGACCGTATCTTCTCCGGCATGCGGCCTACCGGCTCGCTGCACCTCGGCCACTATCACGGCGT
GCTGAAAAACTGGGTGCGTC

Product: peptidase M50

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MDSSLIQTIVVYALPVIFAITLHEAAHGYVARMLGDNTAYVLGRVSFNPMRHIDPIGTILIPLVLYFATSGAFMFGYAKP
VPVAFGNLRNPRWGSLWVALAGPLCNFVQALLWGVFGVALAALNVDEPFFTRMARAGVFVNLVLGVLNLFPLPPLDGGRV
LTALLPVRPAMMLARLEPYGFFIVMALVMTGTLTRFWLSPLVNIGYAAVTAILTPLISLL

Sequences:

>Translated_220_residues
MDSSLIQTIVVYALPVIFAITLHEAAHGYVARMLGDNTAYVLGRVSFNPMRHIDPIGTILIPLVLYFATSGAFMFGYAKP
VPVAFGNLRNPRWGSLWVALAGPLCNFVQALLWGVFGVALAALNVDEPFFTRMARAGVFVNLVLGVLNLFPLPPLDGGRV
LTALLPVRPAMMLARLEPYGFFIVMALVMTGTLTRFWLSPLVNIGYAAVTAILTPLISLL
>Mature_220_residues
MDSSLIQTIVVYALPVIFAITLHEAAHGYVARMLGDNTAYVLGRVSFNPMRHIDPIGTILIPLVLYFATSGAFMFGYAKP
VPVAFGNLRNPRWGSLWVALAGPLCNFVQALLWGVFGVALAALNVDEPFFTRMARAGVFVNLVLGVLNLFPLPPLDGGRV
LTALLPVRPAMMLARLEPYGFFIVMALVMTGTLTRFWLSPLVNIGYAAVTAILTPLISLL

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 23876; Mature: 23876

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDSSLIQTIVVYALPVIFAITLHEAAHGYVARMLGDNTAYVLGRVSFNPMRHIDPIGTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCHHHHHH
IPLVLYFATSGAFMFGYAKPVPVAFGNLRNPRWGSLWVALAGPLCNFVQALLWGVFGVAL
HHHHHHHHCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALNVDEPFFTRMARAGVFVNLVLGVLNLFPLPPLDGGRVLTALLPVRPAMMLARLEPYG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
FFIVMALVMTGTLTRFWLSPLVNIGYAAVTAILTPLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDSSLIQTIVVYALPVIFAITLHEAAHGYVARMLGDNTAYVLGRVSFNPMRHIDPIGTIL
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCHHHHHH
IPLVLYFATSGAFMFGYAKPVPVAFGNLRNPRWGSLWVALAGPLCNFVQALLWGVFGVAL
HHHHHHHHCCCCEEECCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
AALNVDEPFFTRMARAGVFVNLVLGVLNLFPLPPLDGGRVLTALLPVRPAMMLARLEPYG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
FFIVMALVMTGTLTRFWLSPLVNIGYAAVTAILTPLISLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]