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The map label for this gene is yciO [H]

Identifier: 186476189

GI number: 186476189

Start: 1611121

End: 1611813

Strand: Reverse

Name: yciO [H]

Synonym: Bphy_1431

Alternate gene names: 186476189

Gene position: 1611813-1611121 (Counterclockwise)

Preceding gene: 186476190

Following gene: 186476188

Centisome position: 46.33

GC content: 65.08

Gene sequence:

>693_bases
GTGCATCGGCGCGCGCTGCATGAGCCGTCGCTGTTCACCGATTTCCTCACCGACATCATGTCCCAATACTTTCGGCTTCA
TCCCGACAATCCTCAGCCGCGCCTCATCAAACAGGCTGCGCAGATCATCGAGAGCGGCGGCGTGGTTGCGCTGCCGACCG
ACTCGAGCTACGCGCTCGCGTGCCAGCTGGACAACAGGAATGCCGTCGATCGCGTGCGGCGCATCCGCGGCATCGACGAG
CGGCAGCTGCTATCGTTGCTCGTGCGCGATCTGTCGGAGCTGGCGAATTTTGCGCTCGTCGACAACCGTCAGTACCGTCT
GATCAAATCCGTGACGCCCGGCCCCTACGTGTTCGTGCTGCAGGCGACCAAGGAAGTGCCGCGCCGGCTGTCGCATCCGT
CGCGCAAGACGATCGGCTTGCGCGTGCCCGACCACGCGATCACGCTCGCCATTCTGGAAGAGCTCGGCCAGCCGCTGCTC
GGCTCGACGCTGATCCTGCCGGGCGAAACGCAGCCGCTGAACGACCCGGCGGAAATTCGCGAAAGGCTGGAAAAGCAGCT
CGATCTGGTGATCGACGGCGGCGCGTGTCCGTGCGAGCCATCGACGGTGATCGACCTGACAGGCGAAGAGCCCGTGCTGG
TGAGGCCGGGGCGAGGCTCGCTTGCGCCGTTCGGTCTCGAAGAGACGGCCTAG

Upstream 100 bases:

>100_bases
GCGGCCGGCGAGGGCCGCGTCGAACTCGGCAGTCTGCCGCCGTTGCCGTCCGATCTGAAGCCAGTCTGGGAACGTTGGCT
GTAAGCTCTCGTTGTCCGCC

Downstream 100 bases:

>100_bases
ACGCGACATGAGCGAAAGCCGACAGAGCCGCAAGGCGCCGTTGTTACAATAGAGCGATATGGATTCCTCCCTGATACAGA
CCATCGTTGTCTACGCGTTG

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MHRRALHEPSLFTDFLTDIMSQYFRLHPDNPQPRLIKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDE
RQLLSLLVRDLSELANFALVDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLL
GSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPCEPSTVIDLTGEEPVLVRPGRGSLAPFGLEETA

Sequences:

>Translated_230_residues
MHRRALHEPSLFTDFLTDIMSQYFRLHPDNPQPRLIKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDE
RQLLSLLVRDLSELANFALVDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLL
GSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPCEPSTVIDLTGEEPVLVRPGRGSLAPFGLEETA
>Mature_230_residues
MHRRALHEPSLFTDFLTDIMSQYFRLHPDNPQPRLIKQAAQIIESGGVVALPTDSSYALACQLDNRNAVDRVRRIRGIDE
RQLLSLLVRDLSELANFALVDNRQYRLIKSVTPGPYVFVLQATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLL
GSTLILPGETQPLNDPAEIRERLEKQLDLVIDGGACPCEPSTVIDLTGEEPVLVRPGRGSLAPFGLEETA

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=205, Percent_Identity=53.1707317073171, Blast_Score=234, Evalue=3e-63,
Organism=Drosophila melanogaster, GI78707274, Length=208, Percent_Identity=28.8461538461538, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 25549; Mature: 25549

Theoretical pI: Translated: 6.04; Mature: 6.04

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRRALHEPSLFTDFLTDIMSQYFRLHPDNPQPRLIKQAAQIIESGGVVALPTDSSYALA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEE
CQLDNRNAVDRVRRIRGIDERQLLSLLVRDLSELANFALVDNRQYRLIKSVTPGPYVFVL
EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCEEEEE
QATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLLGSTLILPGETQPLNDPAEIR
ECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCHHHCCEEECCCCCCCCCCHHHHH
ERLEKQLDLVIDGGACPCEPSTVIDLTGEEPVLVRPGRGSLAPFGLEETA
HHHHHHHCEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MHRRALHEPSLFTDFLTDIMSQYFRLHPDNPQPRLIKQAAQIIESGGVVALPTDSSYALA
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCEEEE
CQLDNRNAVDRVRRIRGIDERQLLSLLVRDLSELANFALVDNRQYRLIKSVTPGPYVFVL
EEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCCEEEEECCCCCCEEEEE
QATKEVPRRLSHPSRKTIGLRVPDHAITLAILEELGQPLLGSTLILPGETQPLNDPAEIR
ECHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCHHHCCEEECCCCCCCCCCHHHHH
ERLEKQLDLVIDGGACPCEPSTVIDLTGEEPVLVRPGRGSLAPFGLEETA
HHHHHHHCEEECCCCCCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]