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The map label for this gene is hfq [H]

Identifier: 186476173

GI number: 186476173

Start: 1594537

End: 1594773

Strand: Reverse

Name: hfq [H]

Synonym: Bphy_1415

Alternate gene names: 186476173

Gene position: 1594773-1594537 (Counterclockwise)

Preceding gene: 186476174

Following gene: 186476172

Centisome position: 45.84

GC content: 51.48

Gene sequence:

>237_bases
ATGAGCAACAAAGGGCAATTGTTACAAGACCCGTTTTTGAACGCACTGCGTAAAGAGCACGTGCCGGTCTCGATCTATCT
GGTCAACGGCATCAAGCTTCAAGGGAACATTGAATCGTTCGACCAGTACGTCGTGTTGCTCCGGAATACGGTAACCCAGA
TGGTCTACAAGCACGCTATCTCGACTGTCGTGCCTGCCCGTCCGGTGAATTTCCACCCGGATTCCGAATCGTCCTAA

Upstream 100 bases:

>100_bases
CGCTGGTCAATAAAAATCGGCTATAGTGTAGCGATTGACGGCGGATTTCTTTTTCTTCGCCGGCAATAAAGTCAACCTGC
AAAAAAACACGGAGTTTGCT

Downstream 100 bases:

>100_bases
CCCTTCGTCGCGGCCGGTCGAGCCTCGTCCGCAGGCGACACTGCCCGGCCGCTTCATTTTGACATCCACTAATTTGATCA
ACGCAGCGCTTGTCGGCATC

Product: RNA-binding protein Hfq

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 78; Mature: 77

Protein sequence:

>78_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSESS

Sequences:

>Translated_78_residues
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSESS
>Mature_77_residues
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAISTVVPARPVNFHPDSESS

Specific function: RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs [H]

COG id: COG1923

COG function: function code R; Uncharacterized host factor I protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hfq family [H]

Homologues:

Organism=Escherichia coli, GI1790614, Length=71, Percent_Identity=81.6901408450704, Blast_Score=126, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005001
- InterPro:   IPR010920
- InterPro:   IPR001163 [H]

Pfam domain/function: PF01423 LSM [H]

EC number: NA

Molecular weight: Translated: 8794; Mature: 8663

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDSESS
HHHCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
CCCCCCHHHHHHHHHHHCCCCEEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHH
STVVPARPVNFHPDSESS
HHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA