| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is hflX [H]
Identifier: 186476172
GI number: 186476172
Start: 1593234
End: 1594478
Strand: Reverse
Name: hflX [H]
Synonym: Bphy_1414
Alternate gene names: 186476172
Gene position: 1594478-1593234 (Counterclockwise)
Preceding gene: 186476173
Following gene: 186476171
Centisome position: 45.83
GC content: 62.41
Gene sequence:
>1245_bases TTGACATCCACTAATTTGATCAACGCAGCGCTTGTCGGCATCGACTTCGGCAAGATCGATTTCGAAGCCAGTCTCGAAGA ACTCAGCCTGCTCGCGCAAAGCGCGGGCGCCCATCCCGCCGTCACTCTCACCGGTCGCCGTTCCAGCCCCGACGCTGCGA TGTTCGTCGGCAGCGGCAAAGCGGAAGAATTGCGCCTCGCGTGCGAAGCGAACGACGTCGACATCGTCATCTTCAATCAC GCGCTCGCTCCCGCGCAGCAACGTAATCTGGAGCGTACGCTTAACAGACGTGTCGTCGACCGTACCAGCCTGATCCTCGA CATCTTCGCGCAACGCGCGCGCAGCCATGAAGGCAAGCTGCAGGTGGAACTCGCGCAACTGCAATACCTCGCAACGCGAC TCGTGCGCGCGTGGACCCACCTCGAGCGTCAAAAAGGCGGTATCGGCCTGCGCGGTCCCGGCGAAACGCAGCTTGAGACC GACCGCCGGCTGATTGGCGAACGCATCAAGATGCTCAAGGGGCGGCTCGAAAAGCTGGGTCGCCAGCACGGCACGCAGCG TCGCGCGCGGGCGCGCAACCGTACGATGTCGGTGTCACTCGTCGGCTATACGAACGCGGGCAAGTCGACGCTATTCAATG CGCTGACCAAGGCACAGGCGTACGCGGCCGACCAGCTGTTCGCCACACTCGATACGACCTCGCGCCGCGTGTATCTGGGC GAAGAGGTGGGCCAGATCGTCGTATCGGACACCGTAGGGTTCATCCGCGAGCTGCCTCACCAACTGGTGGCGGCGTTCCG CGCGACGCTAGAAGAAACCATTCATGCCGATCTGCTGCTGCACGTCGTCGACGCATCGAGCGCGGTGCGACTAGACCAGA TAGATCAGGTCAACGACGTGTTGCGTGAGATTGGCGCGGACGCGATCCGGCAGGTGCTCGTGTTCAACAAGATCGACGCG GTGCCTGAGCTGGCGGCCCGAGGCGACGCGGTTGAAAGGGACGAGTATGGTAATATTTCGCGCGTCTTTTTGAGCGCGCG CACGGGGCAAGGGCTGGACACACTGCGCGCTGCCATCGCCGAAATCGCAACGGCCGAGCAACTTCCGGAGCCTGACGGTC TACTGTCGGAGGGAGATCCGAGAGCGGCCGTCATTCATCAAGCACAACGCGATGATGCAGGCGAAGACTACCGCGACGAC CGCAAGATCCCAGACACGGGCGCCGACCCGTTCCAATTGCACTGA
Upstream 100 bases:
>100_bases GCCCGTCCGGTGAATTTCCACCCGGATTCCGAATCGTCCTAACCCTTCGTCGCGGCCGGTCGAGCCTCGTCCGCAGGCGA CACTGCCCGGCCGCTTCATT
Downstream 100 bases:
>100_bases CCCGCTGTCTACTCTGGTGAACGAACACAGGTGAACGATTACAACGAGCGGAGTATCTGGCTGCGTGTGCGCGCCATGTT GTCGCTGAACGACCCCCGCT
Product: GTP-binding proten HflX
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 414; Mature: 413
Protein sequence:
>414_residues MTSTNLINAALVGIDFGKIDFEASLEELSLLAQSAGAHPAVTLTGRRSSPDAAMFVGSGKAEELRLACEANDVDIVIFNH ALAPAQQRNLERTLNRRVVDRTSLILDIFAQRARSHEGKLQVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLET DRRLIGERIKMLKGRLEKLGRQHGTQRRARARNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLG EEVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDVLREIGADAIRQVLVFNKIDA VPELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIAEIATAEQLPEPDGLLSEGDPRAAVIHQAQRDDAGEDYRDD RKIPDTGADPFQLH
Sequences:
>Translated_414_residues MTSTNLINAALVGIDFGKIDFEASLEELSLLAQSAGAHPAVTLTGRRSSPDAAMFVGSGKAEELRLACEANDVDIVIFNH ALAPAQQRNLERTLNRRVVDRTSLILDIFAQRARSHEGKLQVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLET DRRLIGERIKMLKGRLEKLGRQHGTQRRARARNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLG EEVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDVLREIGADAIRQVLVFNKIDA VPELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIAEIATAEQLPEPDGLLSEGDPRAAVIHQAQRDDAGEDYRDD RKIPDTGADPFQLH >Mature_413_residues TSTNLINAALVGIDFGKIDFEASLEELSLLAQSAGAHPAVTLTGRRSSPDAAMFVGSGKAEELRLACEANDVDIVIFNHA LAPAQQRNLERTLNRRVVDRTSLILDIFAQRARSHEGKLQVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLETD RRLIGERIKMLKGRLEKLGRQHGTQRRARARNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLGE EVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDVLREIGADAIRQVLVFNKIDAV PELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIAEIATAEQLPEPDGLLSEGDPRAAVIHQAQRDDAGEDYRDDR KIPDTGADPFQLH
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=232, Percent_Identity=36.2068965517241, Blast_Score=112, Evalue=7e-25, Organism=Homo sapiens, GI310133116, Length=230, Percent_Identity=36.5217391304348, Blast_Score=111, Evalue=2e-24, Organism=Homo sapiens, GI310124269, Length=212, Percent_Identity=37.2641509433962, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI310124267, Length=212, Percent_Identity=37.2641509433962, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI310124171, Length=212, Percent_Identity=37.2641509433962, Blast_Score=109, Evalue=5e-24, Organism=Homo sapiens, GI310124169, Length=212, Percent_Identity=37.2641509433962, Blast_Score=109, Evalue=5e-24, Organism=Escherichia coli, GI1790615, Length=374, Percent_Identity=54.8128342245989, Blast_Score=372, Evalue=1e-104, Organism=Caenorhabditis elegans, GI17561038, Length=286, Percent_Identity=30.0699300699301, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI24650079, Length=318, Percent_Identity=32.0754716981132, Blast_Score=107, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 45459; Mature: 45328
Theoretical pI: Translated: 6.20; Mature: 6.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTNLINAALVGIDFGKIDFEASLEELSLLAQSAGAHPAVTLTGRRSSPDAAMFVGSGK CCCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCC AEELRLACEANDVDIVIFNHALAPAQQRNLERTLNRRVVDRTSLILDIFAQRARSHEGKL CHHEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE QVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLETDRRLIGERIKMLKGRLEKLG EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RQHGTQRRARARNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLG HHHCHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC EEVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDV HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LREIGADAIRQVLVFNKIDAVPELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIA HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHH EIATAEQLPEPDGLLSEGDPRAAVIHQAQRDDAGEDYRDDRKIPDTGADPFQLH HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TSTNLINAALVGIDFGKIDFEASLEELSLLAQSAGAHPAVTLTGRRSSPDAAMFVGSGK CCCHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEECCCC AEELRLACEANDVDIVIFNHALAPAQQRNLERTLNRRVVDRTSLILDIFAQRARSHEGKL CHHEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE QVELAQLQYLATRLVRAWTHLERQKGGIGLRGPGETQLETDRRLIGERIKMLKGRLEKLG EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH RQHGTQRRARARNRTMSVSLVGYTNAGKSTLFNALTKAQAYAADQLFATLDTTSRRVYLG HHHCHHHHHHHHCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC EEVGQIVVSDTVGFIRELPHQLVAAFRATLEETIHADLLLHVVDASSAVRLDQIDQVNDV HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH LREIGADAIRQVLVFNKIDAVPELAARGDAVERDEYGNISRVFLSARTGQGLDTLRAAIA HHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHEEEECCCCCCHHHHHHHHH EIATAEQLPEPDGLLSEGDPRAAVIHQAQRDDAGEDYRDDRKIPDTGADPFQLH HHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]