| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476149
Identifier: 186476149
GI number: 186476149
Start: 1564087
End: 1564983
Strand: Direct
Name: 186476149
Synonym: Bphy_1391
Alternate gene names: NA
Gene position: 1564087-1564983 (Clockwise)
Preceding gene: 186476142
Following gene: 186476150
Centisome position: 44.96
GC content: 65.66
Gene sequence:
>897_bases GTGGCGAAAGACAGTCTGTGGTTCGACGGAACGCGCAGACCTTTTGTTAGAATGGGTCGGAGTATAACATCCCGACCTGA GCCTATGAAACACTCCAGCGGCCGCGCGCGAGGCGCCACGCCCCTCTTCGCGACGGCGCTCCGTTCGACGCTTTTCTCGC CGTCGGACGCATCGTGCCGCCGGCATTTGCTCGCGGCATTGCGCGCGGCAGCGGGCACGGCGTGCTGCGGTCTCGCCCTG TTGATGCTGCCTGCCGCACCCGCCTTTGCGCAGAAAACGCAGACGGTTTCCCACGGCCCGGCCGTGCGCGATGTCACGCC GGATGCCGACGCGTCCATTCAGGAGAAGAACTGGACGGCTGCCCTCGCGCAGCTCGACGCGCGCATCGCCGCCAATCCGC GCGACGTGCAGGCCAAATTCAAGCGCGCCACGGTGCTCGCACGCCTGAATCGCGACGACGACGCCATCGCCGCATTCACG GAACTCACGCAGACCTATCCCGAGCTGCCCGAGCCTTACAACAATCTCGCCGCGCTGTACGCGAAGCAGGGCCGCTACAC GGAAGCGCGCGCCGCGCTCGAAACGGCTGTCAAGGCGAGCCCCGGCTACGGTCTCGCGTATGAGAATCTCGGCGACCTGT ATCTGCGCCTCGCGGATCAGGCGTATCGCCGTGCGCAGAGTCTGGGTGCCGGCAACGGCACGACGAGCCAGCGCATCGCC GACATCGAGAAAATCGTCTCGCCGCGTAAGACGGCCGTGAAGAAGACAAGCCAGCCGGCCGCCGAATCGGATTACACGAA TCGCGCGACGCAGAACATCACGAACTCGCAGGGCTTCCAGTTTGGCGGGCCGAACGGTTCGCTCGCGACGCCGCCGTACG TTGCACCATCGCAGTGA
Upstream 100 bases:
>100_bases GCATGCAACTGCATGCACGAACACGGGCGGGCGGCATGACTGACAGCACGTCGCGCAACGGTGCGGGATCAGGCTGACGT CGAAGCGGAGACGACCACGA
Downstream 100 bases:
>100_bases GCGCTTGCGCGCATGCTTTCGGGCTGCGCGCCGGCCGACGCTTTTCATCTGAGTTCACCCTGCTTTCACCCCGAGGATTT ACATGAAATGGTTGATGTTG
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family Protein; Signal Peptide Protein; Tpr Repeat-Containing Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein; TPR Domain-Containing Protein; Exported Protein
Number of amino acids: Translated: 298; Mature: 297
Protein sequence:
>298_residues MAKDSLWFDGTRRPFVRMGRSITSRPEPMKHSSGRARGATPLFATALRSTLFSPSDASCRRHLLAALRAAAGTACCGLAL LMLPAAPAFAQKTQTVSHGPAVRDVTPDADASIQEKNWTAALAQLDARIAANPRDVQAKFKRATVLARLNRDDDAIAAFT ELTQTYPELPEPYNNLAALYAKQGRYTEARAALETAVKASPGYGLAYENLGDLYLRLADQAYRRAQSLGAGNGTTSQRIA DIEKIVSPRKTAVKKTSQPAAESDYTNRATQNITNSQGFQFGGPNGSLATPPYVAPSQ
Sequences:
>Translated_298_residues MAKDSLWFDGTRRPFVRMGRSITSRPEPMKHSSGRARGATPLFATALRSTLFSPSDASCRRHLLAALRAAAGTACCGLAL LMLPAAPAFAQKTQTVSHGPAVRDVTPDADASIQEKNWTAALAQLDARIAANPRDVQAKFKRATVLARLNRDDDAIAAFT ELTQTYPELPEPYNNLAALYAKQGRYTEARAALETAVKASPGYGLAYENLGDLYLRLADQAYRRAQSLGAGNGTTSQRIA DIEKIVSPRKTAVKKTSQPAAESDYTNRATQNITNSQGFQFGGPNGSLATPPYVAPSQ >Mature_297_residues AKDSLWFDGTRRPFVRMGRSITSRPEPMKHSSGRARGATPLFATALRSTLFSPSDASCRRHLLAALRAAAGTACCGLALL MLPAAPAFAQKTQTVSHGPAVRDVTPDADASIQEKNWTAALAQLDARIAANPRDVQAKFKRATVLARLNRDDDAIAAFTE LTQTYPELPEPYNNLAALYAKQGRYTEARAALETAVKASPGYGLAYENLGDLYLRLADQAYRRAQSLGAGNGTTSQRIAD IEKIVSPRKTAVKKTSQPAAESDYTNRATQNITNSQGFQFGGPNGSLATPPYVAPSQ
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32015; Mature: 31884
Theoretical pI: Translated: 10.20; Mature: 10.20
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKDSLWFDGTRRPFVRMGRSITSRPEPMKHSSGRARGATPLFATALRSTLFSPSDASCR CCCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH RHLLAALRAAAGTACCGLALLMLPAAPAFAQKTQTVSHGPAVRDVTPDADASIQEKNWTA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH ALAQLDARIAANPRDVQAKFKRATVLARLNRDDDAIAAFTELTQTYPELPEPYNNLAALY HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH AKQGRYTEARAALETAVKASPGYGLAYENLGDLYLRLADQAYRRAQSLGAGNGTTSQRIA HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DIEKIVSPRKTAVKKTSQPAAESDYTNRATQNITNSQGFQFGGPNGSLATPPYVAPSQ HHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AKDSLWFDGTRRPFVRMGRSITSRPEPMKHSSGRARGATPLFATALRSTLFSPSDASCR CCCCCCCCCCCCHHHHHCCHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHH RHLLAALRAAAGTACCGLALLMLPAAPAFAQKTQTVSHGPAVRDVTPDADASIQEKNWTA HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH ALAQLDARIAANPRDVQAKFKRATVLARLNRDDDAIAAFTELTQTYPELPEPYNNLAALY HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH AKQGRYTEARAALETAVKASPGYGLAYENLGDLYLRLADQAYRRAQSLGAGNGTTSQRIA HHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH DIEKIVSPRKTAVKKTSQPAAESDYTNRATQNITNSQGFQFGGPNGSLATPPYVAPSQ HHHHHHCCHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA