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The map label for this gene is ydhO [H]

Identifier: 186475684

GI number: 186475684

Start: 1019928

End: 1021076

Strand: Reverse

Name: ydhO [H]

Synonym: Bphy_0919

Alternate gene names: 186475684

Gene position: 1021076-1019928 (Counterclockwise)

Preceding gene: 186475685

Following gene: 186475683

Centisome position: 29.35

GC content: 69.71

Gene sequence:

>1149_bases
ATGCTCCGCCTCGCGCTGTCACTATCGGTCGTCGCCCTGCTCGCCGCGTGCTCCGGCGCGCCGCAAAAGACCGTGCGCGG
CTCGGGCGGATCGTATGCGTCCTCGGGTGACGCGTACCGCACCACGCCCCCCGGCTTTCCGCGTTTCGTCGATCACAGCA
TCGGCCGCGAAGAAATCTCCATTCAGGCGATGAGCCTCGTCGGCGTGCCCTATCGCTGGGGCGGCAACACGCCTGACAGC
GGCTTCGACTGCAGCGGGCTCGTGCATTACGTCGTGCAGCGCGCTGCTTCCGTGAACCTGCCGCGCACGACGGCCGACAT
GAGTTCGCGCGGCGAATCGATCGATCCCGACGAAGTCGCGCCGGGCGACCTGATTTTCTTCAACACAACAGGACGGCCGC
ATTCGCATGTCGGGATCTACGTCGGCAAGTTGCGCTTCGTGAACGCACCGTCGACGGGCGGCACCGTGCGGCTCGACTAT
CTGACCAACCCGTATTGGGCGAAGCGTTTCGATGGCATCCGCCGGGTGGCGCCCGCGCTAAGCAAGCCGACGCCTGCGCC
GTTCGATGCGCCGAGCTATCAGGCTGCCGCGCCCGCGCCGTGGGCACCCGCGGCTGCGCCTGCTGTTGCGGCCGTGGATA
CCTCGCGTCATGCCGCAGCTACGGAAGTGCCCGCCGTCGTGCATGGCACGTCTCGCGGCGTCGCCGGCACGTACGCCTCG
CAAGCTCGCACGCAGGCCGCATCCAGCGCGAATACAGCGGCTGTGACTGCGGCCGCGCCCGCCGAGGCCTCCGCCGATCA
GTTCGAACCCCCTCCACCCGGAATGAGCGCGGCGCGGCTGCAGGCGCGCGCAGCAGGCGCGGTGTCGCCGGGCATGGCTG
CTCCGGTGAATTCGCCTGCTACCGACGCGACGATGCAACGCGCCGACCGTACCGCCGCCCCGTCCGATGCCATCGACGCG
GCCGCCGATGCGTACGAGCCGCCGCCGCCCGCCGCCGTGGCCAACCGGCAGGCGCTTCAGGCGCGCCAAGCACAATCGTA
CGGTGATCAGGGCGGCGTGCAGATCATGCGGGCGTCGACGGCTTCGCGGCCGGTTCCCGCGCCGACGCGGACCAACGACG
ATCCGATTGCGGGCTTCGCGAACGACTGA

Upstream 100 bases:

>100_bases
TTCAAGTACTTCATCAAGAATTATTGCGAGAGGCCCGCTGCAGGGGCTACCATCGGGCATTGCCGGCTTTTGGCGAGCGT
CGTTGCTCGTCTGCGCTCTC

Downstream 100 bases:

>100_bases
TGCGGGCTGCCGCACTCGCCCCGCCACATGAGCTCGGAAGCCGCGCGCCCCGACAGCCGCGCCCGATTCGCCCCCCGGCA
TCGCGCACCTCTGCTATCTT

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MLRLALSLSVVALLAACSGAPQKTVRGSGGSYASSGDAYRTTPPGFPRFVDHSIGREEISIQAMSLVGVPYRWGGNTPDS
GFDCSGLVHYVVQRAASVNLPRTTADMSSRGESIDPDEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDY
LTNPYWAKRFDGIRRVAPALSKPTPAPFDAPSYQAAAPAPWAPAAAPAVAAVDTSRHAAATEVPAVVHGTSRGVAGTYAS
QARTQAASSANTAAVTAAAPAEASADQFEPPPPGMSAARLQARAAGAVSPGMAAPVNSPATDATMQRADRTAAPSDAIDA
AADAYEPPPPAAVANRQALQARQAQSYGDQGGVQIMRASTASRPVPAPTRTNDDPIAGFAND

Sequences:

>Translated_382_residues
MLRLALSLSVVALLAACSGAPQKTVRGSGGSYASSGDAYRTTPPGFPRFVDHSIGREEISIQAMSLVGVPYRWGGNTPDS
GFDCSGLVHYVVQRAASVNLPRTTADMSSRGESIDPDEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDY
LTNPYWAKRFDGIRRVAPALSKPTPAPFDAPSYQAAAPAPWAPAAAPAVAAVDTSRHAAATEVPAVVHGTSRGVAGTYAS
QARTQAASSANTAAVTAAAPAEASADQFEPPPPGMSAARLQARAAGAVSPGMAAPVNSPATDATMQRADRTAAPSDAIDA
AADAYEPPPPAAVANRQALQARQAQSYGDQGGVQIMRASTASRPVPAPTRTNDDPIAGFAND
>Mature_382_residues
MLRLALSLSVVALLAACSGAPQKTVRGSGGSYASSGDAYRTTPPGFPRFVDHSIGREEISIQAMSLVGVPYRWGGNTPDS
GFDCSGLVHYVVQRAASVNLPRTTADMSSRGESIDPDEVAPGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDY
LTNPYWAKRFDGIRRVAPALSKPTPAPFDAPSYQAAAPAPWAPAAAPAVAAVDTSRHAAATEVPAVVHGTSRGVAGTYAS
QARTQAASSANTAAVTAAAPAEASADQFEPPPPGMSAARLQARAAGAVSPGMAAPVNSPATDATMQRADRTAAPSDAIDA
AADAYEPPPPAAVANRQALQARQAQSYGDQGGVQIMRASTASRPVPAPTRTNDDPIAGFAND

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=118, Percent_Identity=41.5254237288136, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1786421, Length=130, Percent_Identity=38.4615384615385, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1788501, Length=183, Percent_Identity=32.2404371584699, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1788001, Length=119, Percent_Identity=42.0168067226891, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 39169; Mature: 39169

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLALSLSVVALLAACSGAPQKTVRGSGGSYASSGDAYRTTPPGFPRFVDHSIGREEIS
CEEEHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHE
IQAMSLVGVPYRWGGNTPDSGFDCSGLVHYVVQRAASVNLPRTTADMSSRGESIDPDEVA
EEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
PGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAPAL
CCCEEEEECCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
SKPTPAPFDAPSYQAAAPAPWAPAAAPAVAAVDTSRHAAATEVPAVVHGTSRGVAGTYAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEECCCCCCCHHHHH
QARTQAASSANTAAVTAAAPAEASADQFEPPPPGMSAARLQARAAGAVSPGMAAPVNSPA
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
TDATMQRADRTAAPSDAIDAAADAYEPPPPAAVANRQALQARQAQSYGDQGGVQIMRAST
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
ASRPVPAPTRTNDDPIAGFAND
CCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLRLALSLSVVALLAACSGAPQKTVRGSGGSYASSGDAYRTTPPGFPRFVDHSIGREEIS
CEEEHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHHHHE
IQAMSLVGVPYRWGGNTPDSGFDCSGLVHYVVQRAASVNLPRTTADMSSRGESIDPDEVA
EEEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCC
PGDLIFFNTTGRPHSHVGIYVGKLRFVNAPSTGGTVRLDYLTNPYWAKRFDGIRRVAPAL
CCCEEEEECCCCCCCCEEEEEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
SKPTPAPFDAPSYQAAAPAPWAPAAAPAVAAVDTSRHAAATEVPAVVHGTSRGVAGTYAS
CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHCCCEEEECCCCCCCHHHHH
QARTQAASSANTAAVTAAAPAEASADQFEPPPPGMSAARLQARAAGAVSPGMAAPVNSPA
HHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
TDATMQRADRTAAPSDAIDAAADAYEPPPPAAVANRQALQARQAQSYGDQGGVQIMRAST
HHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
ASRPVPAPTRTNDDPIAGFAND
CCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]