| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186474978
Identifier: 186474978
GI number: 186474978
Start: 232302
End: 233462
Strand: Direct
Name: 186474978
Synonym: Bphy_0209
Alternate gene names: NA
Gene position: 232302-233462 (Clockwise)
Preceding gene: 186474977
Following gene: 186474979
Centisome position: 6.68
GC content: 68.73
Gene sequence:
>1161_bases ATGGCTGACAAGCCGTGGCAGCGTCGTCCGTCGGCGTTCGCGAGGCAGGCGCTGGTGCTGTACGCGGCGCTGATCGTGTA TGGCTCGTGGTATCCGTTCTATGGCTGGCGCTCGCTCGGTCTCGGTCCGTTCGACTATCTGTTCGATCCCGTTCCGCAAT ACCTGACTGCCTTCGATGTCGTGACGAACGTGCTCGGCTACATGCCGTTCGGCGCGCTCGCCGTGCTCGCCGTCTATCCC CGCTGGCGCGGCGCGCTGGCCGTTGCGTTCGCATTCGGGCTCGGCACGCTGCTGTCGGGCCTGATGGAAGCCGTGCAGAC CTATTTGCCGACGCGTGTCGCGTCGAATCTCGATCTCGCGGCGAACGCGCTGGGTGCGCTGCTCGGCGCGACGCTGATGT CGCCGCTGACGGGCGCGCTGCTCGATCGCGGCATGTTGCGGCGCATGCGCTTTCTCTGGTTCGAGCGAGACAGCACGGCC GTGATCGGCCTCGCGGGCCTGTGGCCGTTTGCGACGATGTATCCGTCGCCGCTGCTGCTCGGGCTCGGTACGTGGCCGCG CGAGCTGTGGCTGCGCGCCGACTCGACGATGCAGGAGGCGCTGCTCGCGTGGGCGCCCGCCGCGTGGCATGTGCCGGCGT GGCCCGCGCTCGTCGCGGCATGGCTGCCCGACGACGCATGGGAGGCCTGCATTGCCGCGCTCAACCTGCTGGCGGCGGGC GCGCTCGCGTCGCTGCCGATGCGCGAGCGCGCGCCGCGCGTGCGTCTGCTGATCGCGTTCGTGGTCGCGATGCTGTTCGT GAAGGCGGGCGCAACGTTTCTGCAGTCTCAATCGGGACTCGCGTTCAACTGGGCGACGCCGGGCGCGCTGATCGGCCTCG CCAGCGGCTTTGTCGCGATGTTGCTGGCATTGAAGCTGCCGCGCGGTTCGCGCGCCGCGCTCGCGGCGATCGCGCTTGCC GTGTCGCTCGTGTTCGTCAATCTGCTGCCAGTGAATCCGTATTTCGACGTCGTGCTCGCCGACTGGCGGCAAGGCCGCTA TCTGCATTTCAACGGCCTCGCGCGCTGGCTCGCGTGGATGTGGCCGTATGCGGTGCTCGTGTGGGTCGGGTTGTCGGCGG AACGGGCATTGCTGGCGAAAGGGCGCGGGTCGCGCACGTGA
Upstream 100 bases:
>100_bases CGCCAGCGACGAACTCGTCGCGCAGATTTCCGCATGGCTCGGCGTGCAGCCGCTCGTCGCGCAGCAATGACGGGTTGCCG CGCAGTCACGGAGGCGCTGC
Downstream 100 bases:
>100_bases TTCGTCGAACGGGATGCAGACGCATACGCGCCGATCTGCGGTGTCCGATCCCGGTCGTTATAATCGACGGGCCCTCTCAT TCCTGCTTTCGGCGGGCCGC
Product: VanZ family protein
Products: NA
Alternate protein names: VanZ Like Protein; Transmembrane Protein
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MADKPWQRRPSAFARQALVLYAALIVYGSWYPFYGWRSLGLGPFDYLFDPVPQYLTAFDVVTNVLGYMPFGALAVLAVYP RWRGALAVAFAFGLGTLLSGLMEAVQTYLPTRVASNLDLAANALGALLGATLMSPLTGALLDRGMLRRMRFLWFERDSTA VIGLAGLWPFATMYPSPLLLGLGTWPRELWLRADSTMQEALLAWAPAAWHVPAWPALVAAWLPDDAWEACIAALNLLAAG ALASLPMRERAPRVRLLIAFVVAMLFVKAGATFLQSQSGLAFNWATPGALIGLASGFVAMLLALKLPRGSRAALAAIALA VSLVFVNLLPVNPYFDVVLADWRQGRYLHFNGLARWLAWMWPYAVLVWVGLSAERALLAKGRGSRT
Sequences:
>Translated_386_residues MADKPWQRRPSAFARQALVLYAALIVYGSWYPFYGWRSLGLGPFDYLFDPVPQYLTAFDVVTNVLGYMPFGALAVLAVYP RWRGALAVAFAFGLGTLLSGLMEAVQTYLPTRVASNLDLAANALGALLGATLMSPLTGALLDRGMLRRMRFLWFERDSTA VIGLAGLWPFATMYPSPLLLGLGTWPRELWLRADSTMQEALLAWAPAAWHVPAWPALVAAWLPDDAWEACIAALNLLAAG ALASLPMRERAPRVRLLIAFVVAMLFVKAGATFLQSQSGLAFNWATPGALIGLASGFVAMLLALKLPRGSRAALAAIALA VSLVFVNLLPVNPYFDVVLADWRQGRYLHFNGLARWLAWMWPYAVLVWVGLSAERALLAKGRGSRT >Mature_385_residues ADKPWQRRPSAFARQALVLYAALIVYGSWYPFYGWRSLGLGPFDYLFDPVPQYLTAFDVVTNVLGYMPFGALAVLAVYPR WRGALAVAFAFGLGTLLSGLMEAVQTYLPTRVASNLDLAANALGALLGATLMSPLTGALLDRGMLRRMRFLWFERDSTAV IGLAGLWPFATMYPSPLLLGLGTWPRELWLRADSTMQEALLAWAPAAWHVPAWPALVAAWLPDDAWEACIAALNLLAAGA LASLPMRERAPRVRLLIAFVVAMLFVKAGATFLQSQSGLAFNWATPGALIGLASGFVAMLLALKLPRGSRAALAAIALAV SLVFVNLLPVNPYFDVVLADWRQGRYLHFNGLARWLAWMWPYAVLVWVGLSAERALLAKGRGSRT
Specific function: Unknown
COG id: COG5652
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42169; Mature: 42038
Theoretical pI: Translated: 10.29; Mature: 10.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADKPWQRRPSAFARQALVLYAALIVYGSWYPFYGWRSLGLGPFDYLFDPVPQYLTAFDV CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH VTNVLGYMPFGALAVLAVYPRWRGALAVAFAFGLGTLLSGLMEAVQTYLPTRVASNLDLA HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ANALGALLGATLMSPLTGALLDRGMLRRMRFLWFERDSTAVIGLAGLWPFATMYPSPLLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEE GLGTWPRELWLRADSTMQEALLAWAPAAWHVPAWPALVAAWLPDDAWEACIAALNLLAAG ECCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH ALASLPMRERAPRVRLLIAFVVAMLFVKAGATFLQSQSGLAFNWATPGALIGLASGFVAM HHHHCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH LLALKLPRGSRAALAAIALAVSLVFVNLLPVNPYFDVVLADWRQGRYLHFNGLARWLAWM HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHH WPYAVLVWVGLSAERALLAKGRGSRT HHHHHHHHHCCCHHHHHHHCCCCCCC >Mature Secondary Structure ADKPWQRRPSAFARQALVLYAALIVYGSWYPFYGWRSLGLGPFDYLFDPVPQYLTAFDV CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHH VTNVLGYMPFGALAVLAVYPRWRGALAVAFAFGLGTLLSGLMEAVQTYLPTRVASNLDLA HHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH ANALGALLGATLMSPLTGALLDRGMLRRMRFLWFERDSTAVIGLAGLWPFATMYPSPLLL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCCEE GLGTWPRELWLRADSTMQEALLAWAPAAWHVPAWPALVAAWLPDDAWEACIAALNLLAAG ECCCCHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH ALASLPMRERAPRVRLLIAFVVAMLFVKAGATFLQSQSGLAFNWATPGALIGLASGFVAM HHHHCCHHHHCCHHHHHHHHHHHHHHHHHCHHHHHCCCCCEEECCCCHHHHHHHHHHHHH LLALKLPRGSRAALAAIALAVSLVFVNLLPVNPYFDVVLADWRQGRYLHFNGLARWLAWM HHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEEHHHHHHHHHHH WPYAVLVWVGLSAERALLAKGRGSRT HHHHHHHHHCCCHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA