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The map label for this gene is ygcF [H]

Identifier: 186474815

GI number: 186474815

Start: 52054

End: 52686

Strand: Direct

Name: ygcF [H]

Synonym: Bphy_0044

Alternate gene names: 186474815

Gene position: 52054-52686 (Clockwise)

Preceding gene: 186474814

Following gene: 186474816

Centisome position: 1.5

GC content: 61.14

Gene sequence:

>633_bases
ATGACGTACGCGGTCAAGGAAATCTTCTATACGTTGCAGGGCGAGGGCGCTAACGCCGGACGTCCGGCCGTTTTCTGCCG
GTTCGCCGGATGCAACCTGTGGTCCGGCCGCGAGGAAGATCGCGCTGACGCGGTGTGCAAGTTCTGCGACACCGACTTCG
TCGGCACGGACGGCGAAAACGGCGGCAAATTCCGCACGCCAGAAGAACTGGCGGCGAAGATCGCATCGTTGTGGCCGGAA
GGCGAGGATCAGCGTTTCGTCGTGTGCACGGGCGGGGAGCCGATGCTGCAGATCGATCAGCCGCTGGTCGACGCGTTGCA
CGCTCAAGGTTTTGAAATTGCTATCGAAACGAATGGCTCGCTTCCCGTGCTCGATACGATCGACTGGATTTGCGTGAGCC
CGAAGGCCGGCGCGCCGCTCGTGCAGACCAAGGGCAACGAACTGAAAGTGGTCGTCCCGCAGGACAACCAGCGCCTTGCC
GACTATGCGAAGCTCGAGTTCGACTATTTCCTCGTCCAGCCGATGGACGGGCCGTCGCGGGACATCAACACGAAGCTCGC
GATCGACTGGTGCAAGCGCCATCCGCAATGGCGCCTGTCGATGCAGACTCACAAGTACCTGAACATTCCCTGA

Upstream 100 bases:

>100_bases
GAGCGGCGAGCAGGTCACGGAGCCGGCCTGAAGCTTCACCACGCAAGGCGAAGAGCACACACATCAACAGCGCTTCACGG
AGCATCGGGCAGAAAGCAGC

Downstream 100 bases:

>100_bases
TTTGCCGTGCTGACGATTACCCGAAAACTCGAATTCGACGCGGGCCACCGCATTCCCGATCACCGCAGCCAGTGCCGGAA
TCTGCACGGTCACCGCTACG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 209

Protein sequence:

>210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGENGGKFRTPEELAAKIASLWPE
GEDQRFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGSLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLA
DYAKLEFDYFLVQPMDGPSRDINTKLAIDWCKRHPQWRLSMQTHKYLNIP

Sequences:

>Translated_210_residues
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGENGGKFRTPEELAAKIASLWPE
GEDQRFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGSLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLA
DYAKLEFDYFLVQPMDGPSRDINTKLAIDWCKRHPQWRLSMQTHKYLNIP
>Mature_209_residues
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGENGGKFRTPEELAAKIASLWPEG
EDQRFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGSLPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLAD
YAKLEFDYFLVQPMDGPSRDINTKLAIDWCKRHPQWRLSMQTHKYLNIP

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=236, Percent_Identity=33.0508474576271, Blast_Score=92, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23428; Mature: 23297

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGEN
CCEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKFRTPEELAAKIASLWPEGEDQRFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGS
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECHHHHHHHHCCCEEEEEECCCC
LPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPSR
CCCCCCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHEEEEEEEEEECCCCCCC
DINTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC
>Mature Secondary Structure 
TYAVKEIFYTLQGEGANAGRPAVFCRFAGCNLWSGREEDRADAVCKFCDTDFVGTDGEN
CEEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
GGKFRTPEELAAKIASLWPEGEDQRFVVCTGGEPMLQIDQPLVDALHAQGFEIAIETNGS
CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEECHHHHHHHHCCCEEEEEECCCC
LPVLDTIDWICVSPKAGAPLVQTKGNELKVVVPQDNQRLADYAKLEFDYFLVQPMDGPSR
CCCCCCCCEEEECCCCCCCEEEECCCEEEEEECCCCCHHHHHHEEEEEEEEEECCCCCCC
DINTKLAIDWCKRHPQWRLSMQTHKYLNIP
CCCCEEEEEHHHCCCCEEEEEECCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]