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The map label for this gene is nifL [H]

Identifier: 183220612

GI number: 183220612

Start: 1269429

End: 1269992

Strand: Reverse

Name: nifL [H]

Synonym: LEPBI_I1218

Alternate gene names: 183220612

Gene position: 1269992-1269429 (Counterclockwise)

Preceding gene: 183220613

Following gene: 183220609

Centisome position: 35.28

GC content: 32.62

Gene sequence:

>564_bases
TTGGATAATAAACTTGAGGAAATTTATTTTGAATTAGGACAAAGACAGTTTGCAATCGATCAACATGCAATTGTTGCGAT
TACGAATTTGAATGCAGATATAATTTATGCTAATCGAAAGTTTTGTGAAATCAGTAAGTATTCGCGAAATGAATTAATTG
GAAAAAATCATCGCATAATCAATTCAGGATACCATCCAGCTGATTTTTTTAAGAATTTGTACAAAACGATCAAGTCCAGT
AAAACATGGCATGGAGAGATTAGAAACAAAGCTAAGGATGGAAGTTTCTACTGGGTAGCAACAACAATTGCTCCAATCAA
AAATGCGCGTGGAGAAATTGAGAAATATCTTTCAATAAGAACCGATATAACGGAAATTAAAGAAGCAGATGAGAAAATAA
AATCACTTTTAAAAGAAAAGGCTCTAATCTTAATCGAGGTGCATCATCGAATCAAAAACAACATGAATACAATTTATAGT
CTGTTAAAAATAGAGGCAAATTCACAAGAGGACAAAGCACATAAAATGACCTGCCCCCGTTTGTTGGACCAAATATTAAG
TTAG

Upstream 100 bases:

>100_bases
TAGAAAATATTAAATTTTTTACCCAACGCCCATCTTTAATGAGAAAGGGGATTGTATAGGTTCCCATGGTACTGCCAACG
ATTTTACTTTCAAACGTACC

Downstream 100 bases:

>100_bases
TTAAATCCTCATAATTTAATTTCCATACTTCGCTTTGAACTCTAAGGGAGTCAAATAATTTAAAGAAGAATGTAGACGTT
CTTCATTGTAGTCCTTTTGG

Product: putative two-component sensor histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MDNKLEEIYFELGQRQFAIDQHAIVAITNLNADIIYANRKFCEISKYSRNELIGKNHRIINSGYHPADFFKNLYKTIKSS
KTWHGEIRNKAKDGSFYWVATTIAPIKNARGEIEKYLSIRTDITEIKEADEKIKSLLKEKALILIEVHHRIKNNMNTIYS
LLKIEANSQEDKAHKMTCPRLLDQILS

Sequences:

>Translated_187_residues
MDNKLEEIYFELGQRQFAIDQHAIVAITNLNADIIYANRKFCEISKYSRNELIGKNHRIINSGYHPADFFKNLYKTIKSS
KTWHGEIRNKAKDGSFYWVATTIAPIKNARGEIEKYLSIRTDITEIKEADEKIKSLLKEKALILIEVHHRIKNNMNTIYS
LLKIEANSQEDKAHKMTCPRLLDQILS
>Mature_187_residues
MDNKLEEIYFELGQRQFAIDQHAIVAITNLNADIIYANRKFCEISKYSRNELIGKNHRIINSGYHPADFFKNLYKTIKSS
KTWHGEIRNKAKDGSFYWVATTIAPIKNARGEIEKYLSIRTDITEIKEADEKIKSLLKEKALILIEVHHRIKNNMNTIYS
LLKIEANSQEDKAHKMTCPRLLDQILS

Specific function: Required for the inhibition of nifA activity in response to oxygen and low level of fixed nitrogen [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1789453, Length=117, Percent_Identity=31.6239316239316, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR014285
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR005467 [H]

Pfam domain/function: PF02518 HATPase_c; PF00989 PAS [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 21767; Mature: 21767

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNKLEEIYFELGQRQFAIDQHAIVAITNLNADIIYANRKFCEISKYSRNELIGKNHRII
CCCHHHHHHHHHCCHHEEECCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCEEE
NSGYHPADFFKNLYKTIKSSKTWHGEIRNKAKDGSFYWVATTIAPIKNARGEIEKYLSIR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
TDITEIKEADEKIKSLLKEKALILIEVHHRIKNNMNTIYSLLKIEANSQEDKAHKMTCPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHH
LLDQILS
HHHHHCC
>Mature Secondary Structure
MDNKLEEIYFELGQRQFAIDQHAIVAITNLNADIIYANRKFCEISKYSRNELIGKNHRII
CCCHHHHHHHHHCCHHEEECCCEEEEEEECCCEEEECCCCHHHHHHHHHHHHCCCCCEEE
NSGYHPADFFKNLYKTIKSSKTWHGEIRNKAKDGSFYWVATTIAPIKNARGEIEKYLSIR
CCCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
TDITEIKEADEKIKSLLKEKALILIEVHHRIKNNMNTIYSLLKIEANSQEDKAHKMTCPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHH
LLDQILS
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8231815; 2840552; 9601070; 9593306 [H]