BacMap

Definition	Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome.
Accession	NC_010581
Length	4,170,153

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The map label for this gene is ykvO [H]

Identifier: 182679696

GI number: 182679696

Start: 3171866

End: 3172615

Strand: Reverse

Name: ykvO [H]

Synonym: Bind_2783

Alternate gene names: 182679696

Gene position: 3172615-3171866 (Counterclockwise)

Preceding gene: 182679698

Following gene: 182679681

Centisome position: 76.08

GC content: 59.73

Gene sequence:

>750_bases
ATGCAACGTCTAAAGGACAAGGTGGCCGTCATAACGGGCGGCAACAGTGGCATTGGGAAGGCAACCGCGCGCCTGTTTGC
GCAGGAAGGGGCGCAGGTCATCATCACTGGCCGTAGACAGGAGGTTGTCGATCAAGCTCTGGAAGAAATTGGCTACAACG
CTATCGGCATCGTCGGCGACGTCACCGATGTCCGATATCATCGGACGCTCGCAGAAAAGGTGGAGGACCGTTTCGGCGGA
CTAGACATCTACATGGCCAATGCAGGTATCATCAACCTGACACCATCCCATAAAGTCACGTTGGAAGAATATGACGGCCA
ATTCGCCACCAATACGCGCGGTGTGTTCTTCGGTGTGCAGGCGATGGAGCCCGTCATGCGTGACGGTGGTTCGATCATCA
TCACCGGTTCGCTCGCGGCAACCAAAGTGCTGCCGGACCATGCCGTTTACGCTGGTTCGAAAGCGGCGGTCGCCGCGTTC
GCGAAGAACTGGGCGATCGAGTTCAAGTCCCGGAAAATCCGCGTCAACATCCTGAGCCCTGGACCGGTCGAGACTGCCAT
TCTCGGCAAGCTCGGGATATCCGACGCCGACCGTCTGGCCTTCGAGTCCCGGATGGCGTCCCTCATCCCGGCGGGCCGCA
TGGGACAGGTGGAGGAACTGGCGCGCGCCGCTCTCTTCCTCGCATCGGACGGGGGAAGTTTCGTCAACGGCATTGAGTTG
CACGTCGACGGCGGCATGGCACTGACGTGA

Upstream 100 bases:

>100_bases
CGGCATTTCCATCTCCAAGGCACAAATCATGTGCCGCCATCGGTCTAGCAGCATCAGGCAGGTAAATTTATCTTATATCT
GTGATAGTTGGAGACAGGTG

Downstream 100 bases:

>100_bases
AAAAGCCGCATGGACGCGGGATCGGGAAAAATTTCGTGCTCCGTGTCACAAACAGCCGCGCTAGCTGTTTAATCCCGGCC
TTTGATGGTGCAATTCTTTC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MQRLKDKVAVITGGNSGIGKATARLFAQEGAQVIITGRRQEVVDQALEEIGYNAIGIVGDVTDVRYHRTLAEKVEDRFGG
LDIYMANAGIINLTPSHKVTLEEYDGQFATNTRGVFFGVQAMEPVMRDGGSIIITGSLAATKVLPDHAVYAGSKAAVAAF
AKNWAIEFKSRKIRVNILSPGPVETAILGKLGISDADRLAFESRMASLIPAGRMGQVEELARAALFLASDGGSFVNGIEL
HVDGGMALT

Sequences:

>Translated_249_residues
MQRLKDKVAVITGGNSGIGKATARLFAQEGAQVIITGRRQEVVDQALEEIGYNAIGIVGDVTDVRYHRTLAEKVEDRFGG
LDIYMANAGIINLTPSHKVTLEEYDGQFATNTRGVFFGVQAMEPVMRDGGSIIITGSLAATKVLPDHAVYAGSKAAVAAF
AKNWAIEFKSRKIRVNILSPGPVETAILGKLGISDADRLAFESRMASLIPAGRMGQVEELARAALFLASDGGSFVNGIEL
HVDGGMALT
>Mature_249_residues
MQRLKDKVAVITGGNSGIGKATARLFAQEGAQVIITGRRQEVVDQALEEIGYNAIGIVGDVTDVRYHRTLAEKVEDRFGG
LDIYMANAGIINLTPSHKVTLEEYDGQFATNTRGVFFGVQAMEPVMRDGGSIIITGSLAATKVLPDHAVYAGSKAAVAAF
AKNWAIEFKSRKIRVNILSPGPVETAILGKLGISDADRLAFESRMASLIPAGRMGQVEELARAALFLASDGGSFVNGIEL
HVDGGMALT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI32483357, Length=255, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=30.8943089430894, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI40254992, Length=245, Percent_Identity=30.2040816326531, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=30.3846153846154, Blast_Score=98, Evalue=6e-21,
Organism=Homo sapiens, GI126723750, Length=252, Percent_Identity=30.5555555555556, Blast_Score=97, Evalue=2e-20,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=33.1550802139037, Blast_Score=96, Evalue=3e-20,
Organism=Homo sapiens, GI7705925, Length=249, Percent_Identity=30.1204819277108, Blast_Score=96, Evalue=4e-20,
Organism=Homo sapiens, GI10190704, Length=253, Percent_Identity=32.0158102766798, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=34.5744680851064, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI66933014, Length=257, Percent_Identity=31.9066147859922, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI59889578, Length=237, Percent_Identity=32.4894514767932, Blast_Score=84, Evalue=8e-17,
Organism=Homo sapiens, GI15277342, Length=258, Percent_Identity=27.5193798449612, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI4503301, Length=255, Percent_Identity=31.3725490196078, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI20149619, Length=193, Percent_Identity=28.4974093264249, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI157739938, Length=187, Percent_Identity=26.2032085561497, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40254986, Length=205, Percent_Identity=28.2926829268293, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI109715829, Length=244, Percent_Identity=26.6393442622951, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=31.7708333333333, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI4557649, Length=209, Percent_Identity=30.1435406698565, Blast_Score=68, Evalue=1e-11,
Organism=Escherichia coli, GI1789378, Length=253, Percent_Identity=36.3636363636364, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=36.0655737704918, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI87082100, Length=255, Percent_Identity=31.3725490196078, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1790717, Length=248, Percent_Identity=32.6612903225806, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1788459, Length=249, Percent_Identity=31.7269076305221, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI87082160, Length=250, Percent_Identity=31.2, Blast_Score=97, Evalue=8e-22,
Organism=Escherichia coli, GI1787905, Length=248, Percent_Identity=32.258064516129, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786812, Length=244, Percent_Identity=31.5573770491803, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787820, Length=179, Percent_Identity=30.7262569832402, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=30.952380952381, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789208, Length=250, Percent_Identity=29.2, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI2367365, Length=248, Percent_Identity=30.241935483871, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787526, Length=193, Percent_Identity=27.979274611399, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1786701, Length=206, Percent_Identity=24.2718446601942, Blast_Score=62, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=264, Percent_Identity=35.2272727272727, Blast_Score=131, Evalue=4e-31,
Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=35.6060606060606, Blast_Score=127, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI17538486, Length=266, Percent_Identity=34.9624060150376, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=33.5849056603774, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI72000259, Length=262, Percent_Identity=32.0610687022901, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=30.9160305343511, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI17562904, Length=266, Percent_Identity=33.0827067669173, Blast_Score=111, Evalue=4e-25,
Organism=Caenorhabditis elegans, GI17562990, Length=262, Percent_Identity=31.2977099236641, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17560220, Length=265, Percent_Identity=34.3396226415094, Blast_Score=107, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI17538480, Length=263, Percent_Identity=32.6996197718631, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17565030, Length=264, Percent_Identity=34.469696969697, Blast_Score=105, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI115534694, Length=250, Percent_Identity=34.4, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=30.1526717557252, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17560332, Length=267, Percent_Identity=32.2097378277154, Blast_Score=104, Evalue=4e-23,
Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=32.7067669172932, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=31.7073170731707, Blast_Score=103, Evalue=6e-23,
Organism=Caenorhabditis elegans, GI71994604, Length=249, Percent_Identity=30.5220883534137, Blast_Score=102, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.0566037735849, Blast_Score=101, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI17551412, Length=265, Percent_Identity=32.8301886792453, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=30.8300395256917, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17531453, Length=264, Percent_Identity=31.4393939393939, Blast_Score=99, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17560676, Length=252, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=33.203125, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=30.6772908366534, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17561402, Length=256, Percent_Identity=29.296875, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=30.0395256916996, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI71982365, Length=188, Percent_Identity=28.1914893617021, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=253, Percent_Identity=30.8300395256917, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=28.1368821292776, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71997099, Length=223, Percent_Identity=30.9417040358744, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71997402, Length=179, Percent_Identity=29.608938547486, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324126, Length=262, Percent_Identity=26.7175572519084, Blast_Score=77, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=32.3076923076923, Blast_Score=76, Evalue=6e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=217, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322227, Length=192, Percent_Identity=30.2083333333333, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=35.3413654618474, Blast_Score=123, Evalue=1e-28,
Organism=Drosophila melanogaster, GI21357041, Length=250, Percent_Identity=31.6, Blast_Score=121, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24643142, Length=246, Percent_Identity=30.4878048780488, Blast_Score=120, Evalue=8e-28,
Organism=Drosophila melanogaster, GI28571526, Length=250, Percent_Identity=31.2, Blast_Score=116, Evalue=1e-26,
Organism=Drosophila melanogaster, GI24644339, Length=245, Percent_Identity=32.6530612244898, Blast_Score=114, Evalue=4e-26,
Organism=Drosophila melanogaster, GI21355319, Length=255, Percent_Identity=31.3725490196078, Blast_Score=106, Evalue=1e-23,
Organism=Drosophila melanogaster, GI24639444, Length=249, Percent_Identity=31.7269076305221, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24644337, Length=244, Percent_Identity=30.7377049180328, Blast_Score=95, Evalue=5e-20,
Organism=Drosophila melanogaster, GI17737361, Length=263, Percent_Identity=28.5171102661597, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI281364494, Length=221, Percent_Identity=30.7692307692308, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24580925, Length=223, Percent_Identity=28.6995515695067, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=29.6875, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641232, Length=223, Percent_Identity=30.4932735426009, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24640492, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24663911, Length=212, Percent_Identity=29.7169811320755, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI116007236, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI21358495, Length=195, Percent_Identity=26.1538461538462, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26449; Mature: 26449

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLKDKVAVITGGNSGIGKATARLFAQEGAQVIITGRRQEVVDQALEEIGYNAIGIVGD
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEC
VTDVRYHRTLAEKVEDRFGGLDIYMANAGIINLTPSHKVTLEEYDGQFATNTRGVFFGVQ
CHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEECCCEEECCCCEEEEEHH
AMEPVMRDGGSIIITGSLAATKVLPDHAVYAGSKAAVAAFAKNWAIEFKSRKIRVNILSP
HHHHHHHCCCCEEEECCCCEEEECCCCCEECCCHHHHHHHHHCEEEEEECCEEEEEEECC
GPVETAILGKLGISDADRLAFESRMASLIPAGRMGQVEELARAALFLASDGGSFVNGIEL
CCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCEECEEEE
HVDGGMALT
EECCCEEEC
>Mature Secondary Structure
MQRLKDKVAVITGGNSGIGKATARLFAQEGAQVIITGRRQEVVDQALEEIGYNAIGIVGD
CCCCCCEEEEEECCCCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCEEEEEEC
VTDVRYHRTLAEKVEDRFGGLDIYMANAGIINLTPSHKVTLEEYDGQFATNTRGVFFGVQ
CHHHHHHHHHHHHHHHHHCCEEEEEECCCEEEECCCCEEEEEECCCEEECCCCEEEEEHH
AMEPVMRDGGSIIITGSLAATKVLPDHAVYAGSKAAVAAFAKNWAIEFKSRKIRVNILSP
HHHHHHHCCCCEEEECCCCEEEECCCCCEECCCHHHHHHHHHCEEEEEECCEEEEEEECC
GPVETAILGKLGISDADRLAFESRMASLIPAGRMGQVEELARAALFLASDGGSFVNGIEL
CCCCHHEEECCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEECCCCCEECEEEE
HVDGGMALT
EECCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]