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The map label for this gene is yhjC [C]

Identifier: 182679698

GI number: 182679698

Start: 3173674

End: 3174609

Strand: Reverse

Name: yhjC [C]

Synonym: Bind_2785

Alternate gene names: 182679698

Gene position: 3174609-3173674 (Counterclockwise)

Preceding gene: 182679703

Following gene: 182679696

Centisome position: 76.13

GC content: 58.97

Gene sequence:

>936_bases
ATGGACATCGTTTGCGCGTTGCGGACATTCCTGAGAGTCGCCGAGACGGGCTCGTTTTCGGCCGCTGCTGTCGATCTCAA
ACTGACGCAGCCTGCGGTCTCCCGGCAGGTTTCAGCACTCGAAGCCCATCTCGATACGCGCCTTCTGCATCGCTCAACCA
CCGCGTTGGCGTTGACGTCCGAGGGGGAACGAATGATCCCAATGGCTCTCAAGGTTATCGAAGCTGTGGAGGCGCTCGGC
GAGTCTGCCGGCCAGGTAGGGACGGCATCGGGCGAGGTGCGGCTCTCCGTACCGGCGCCGCTAGGGCTGTATATGAGTGA
CCGGCTTGCGGCCCTTCTTGATCATCACCCACAACTTTCCGTCGAATTGTTGTTTCGCGAGGAACCGTCCGATCTGGTCG
GACAGGGGATCGACCTCGAAGTCCGTCTAGGCAATATCGCCGACTCCAGCCTGATATGCCGCAGGATCGGCTGGACAACA
GCCTTTCTCGTCGCCACGCCAGCCTACCTCGAAAAACGGGGCACGCCCCGAGCGCTTGAGGATTTGAGTCATCATGACTG
CATCTGCTACAAACGGGGAGGCGACAGTCGTTCCTGGCTATTCTCCAATGGCGCGGACGAAGTCGCAGTGCGAATCGCGC
CACGTCTTATCGTAAACAATGCTGTAGCTGTTCATCGCGCCGTTCTTGCCGGCGCGGGCATTGCGATTCTCTCCCATATA
CTTGCCGTTCCTGACATCGAGACCGGCCGATTGATCAGCTTAATACCGGATTTCCCGCCGGCTCGTCTGCCGATCACGCT
CGCCTATCCATCTCGGCGAAATATGCCTTTTCGCGTGAGAGCTGTCATTGATTATCTCGTTGCCGCGATGCGGGAAGACC
CTCTTATGACCTCGTCCTCGGCGTCGAACGCCTCCTCTCTCGCGGAGCTAGAATAG

Upstream 100 bases:

>100_bases
AATCCTCATAGATATTTAATATCCTTAATATCTGGACGGTAAAGCCGTTCTGGCTTAAGCTCTGGACATAAGGCTTATGT
CCAGAGCTAAGAGGGTACGA

Downstream 100 bases:

>100_bases
CACACCAGCAGCGCGCAGACCCGGCGGAATCCTGTTCAAGGTATCAAGCGACATCATCATGTCGTGTTTACATTGCGCCG
ATGATCTTGGCCTCATCTGC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MDIVCALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERMIPMALKVIEAVEALG
ESAGQVGTASGEVRLSVPAPLGLYMSDRLAALLDHHPQLSVELLFREEPSDLVGQGIDLEVRLGNIADSSLICRRIGWTT
AFLVATPAYLEKRGTPRALEDLSHHDCICYKRGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILSHI
LAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMREDPLMTSSSASNASSLAELE

Sequences:

>Translated_311_residues
MDIVCALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERMIPMALKVIEAVEALG
ESAGQVGTASGEVRLSVPAPLGLYMSDRLAALLDHHPQLSVELLFREEPSDLVGQGIDLEVRLGNIADSSLICRRIGWTT
AFLVATPAYLEKRGTPRALEDLSHHDCICYKRGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILSHI
LAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMREDPLMTSSSASNASSLAELE
>Mature_311_residues
MDIVCALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTSEGERMIPMALKVIEAVEALG
ESAGQVGTASGEVRLSVPAPLGLYMSDRLAALLDHHPQLSVELLFREEPSDLVGQGIDLEVRLGNIADSSLICRRIGWTT
AFLVATPAYLEKRGTPRALEDLSHHDCICYKRGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILSHI
LAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMREDPLMTSSSASNASSLAELE

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=306, Percent_Identity=31.0457516339869, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI1789440, Length=290, Percent_Identity=28.9655172413793, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=29.8969072164948, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1789639, Length=295, Percent_Identity=29.4915254237288, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787128, Length=282, Percent_Identity=29.4326241134752, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI87081978, Length=284, Percent_Identity=29.5774647887324, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI1787589, Length=279, Percent_Identity=28.673835125448, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1789173, Length=255, Percent_Identity=25.8823529411765, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33487; Mature: 33487

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVCALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTS
CCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
EGERMIPMALKVIEAVEALGESAGQVGTASGEVRLSVPAPLGLYMSDRLAALLDHHPQLS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEE
VELLFREEPSDLVGQGIDLEVRLGNIADSSLICRRIGWTTAFLVATPAYLEKRGTPRALE
EEEEEECCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEHCCHHHHHHCCCCHHHH
DLSHHDCICYKRGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILSHI
HCCCCCEEEEECCCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMREDPLMTSSS
HHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
ASNASSLAELE
CCCCCHHHCCC
>Mature Secondary Structure
MDIVCALRTFLRVAETGSFSAAAVDLKLTQPAVSRQVSALEAHLDTRLLHRSTTALALTS
CCHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC
EGERMIPMALKVIEAVEALGESAGQVGTASGEVRLSVPAPLGLYMSDRLAALLDHHPQLS
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCEE
VELLFREEPSDLVGQGIDLEVRLGNIADSSLICRRIGWTTAFLVATPAYLEKRGTPRALE
EEEEEECCCHHHHCCCCEEEEEECCCCCHHHHHHHHCCCEEEEHCCHHHHHHCCCCHHHH
DLSHHDCICYKRGGDSRSWLFSNGADEVAVRIAPRLIVNNAVAVHRAVLAGAGIAILSHI
HCCCCCEEEEECCCCCCCEEECCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
LAVPDIETGRLISLIPDFPPARLPITLAYPSRRNMPFRVRAVIDYLVAAMREDPLMTSSS
HHCCCCCCCCEEEECCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
ASNASSLAELE
CCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]