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The map label for this gene is ykgD [C]

Identifier: 182679295

GI number: 182679295

Start: 2676109

End: 2677020

Strand: Reverse

Name: ykgD [C]

Synonym: Bind_2339

Alternate gene names: 182679295

Gene position: 2677020-2676109 (Counterclockwise)

Preceding gene: 182679296

Following gene: 182679294

Centisome position: 64.19

GC content: 56.8

Gene sequence:

>912_bases
ATGGGTGCGACATCCAGCAAACGGCCTGTATTCGAGCACATCCTGGCTGAAGCCACGGACTCCTTCGTCTGGAGGCTCGA
CGATTATCCCTTCAAGCGGATGGGCTGGCATATTCATCCGGAATGCGAGATCCATCTCATTCGCGAGAGCTCGGGAATCG
AGCTTGTTGGAGATCATATCGGTGAGTTTGCGCCGGGGCGCCTCACAATCGTCGGAGGTGATCTTCCGCATGATTGGGTG
ACCAGTCTCTCGCCGGGAGAAACGGTTCGCGGACGCGATATTGTCGTGCAGTTCGATGCCGGGCGTTGGTGTCAGGCCGC
CGCGATTTTGCCGGAACTCGCCATGCTCGAACCTTTTCTCGCACGTGCCTCTCGGGGGCTTGGTTTCCATGGCGAGACCC
GGGAGAAAGGCGCGCAGATTCTCGAAAGCATGGGGCAGGCAAGGGGGCTCGATCGGCTGTGCCTCCTGTTCCGACTGCTC
GCCCTTCTGGCGGGTTCACATGAATATGAGATCCTGTCCTCGGAAGATTTTATGCCGAACCGCGATCCGGCCATGGTCGA
CACGGTTCAGCAAGTCATGTCCTATCTGTTCGATCATTTCACGAGTGATATCAGGCTGACCGACCTCGCGAATATGGTTG
GAATGAGCGAGAGCGCCTTCTCGCGATTCTTCCAGAAGAACAGCGGCAATAGTTTCACTGATCATGTCATGAAGCTGCGC
CTGGGGCGGGCCTGCAAGCTCCTGGCTGATTCCGACATGCCGATCACCGATATCTGTTTCGAGGTCGGCTATGCGAATAT
TTCCAATTTCAATCGCAATTTTCGCCAGCAGCGCGGCCTCACGCCATCGCTCTATCGCCGGTGGGCCAGGCAACGGATCA
TTGATGCTCCATCGCCAATGGATGCGTCATAA

Upstream 100 bases:

>100_bases
TTCGCCTTTTTCAAAAGCATGGCGAGAATTTGATGAGAATCCAACGGTCATTCATCACGACCGTTGGATACCGGATATGT
CATCGTAGGAAGGTTTGTGC

Downstream 100 bases:

>100_bases
GCAAATGGTCCTGTCAAAGAATGTCTGTGTCGCCAACGATTGATACGCAAGCATTGATCCTGGCTTGAACGATAAACAAG
AGGAAACACCAATGGATATG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Two Component Transcriptional Regulator AraC Family; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Activator Protein MtlR; Response Regulator Receiver Protein; Transcriptional Regulator Arac Family; AraC Family Regulatory Protein; Transcriptional Regulator Protein; Transcriptional Regulator MtlR; L-Rhamnose Operon Transcriptional Activator; Two-Component Response Regulator; Activator Protein; Transcriptional Activator MltR; Two Component Transcriptional Regulator; Response Regulator; Transcriptional Regulatory Protein; AraC Family Transcription Regulator; Helix-Turn-Helix AraC Type; AraC Family Transcription Regulator Protein; AraC Family Two Component Transcriptional Regulator; Response Regulator Receiver Domain Protein; Two Component System Response Regulator; Transcriptional Activator; AraC/XylS Family Transcriptional Regulator; Transcriptional Regulator AraC/XylS Family; Two Component Transcriptional Regulator Arac Family; Transcriptional Regulator Protein AraC Family; Helix-Turn-Helix Protein; ATPase Domain-Containing Protein; Two Component AraC Family Transcriptional Regulator

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MGATSSKRPVFEHILAEATDSFVWRLDDYPFKRMGWHIHPECEIHLIRESSGIELVGDHIGEFAPGRLTIVGGDLPHDWV
TSLSPGETVRGRDIVVQFDAGRWCQAAAILPELAMLEPFLARASRGLGFHGETREKGAQILESMGQARGLDRLCLLFRLL
ALLAGSHEYEILSSEDFMPNRDPAMVDTVQQVMSYLFDHFTSDIRLTDLANMVGMSESAFSRFFQKNSGNSFTDHVMKLR
LGRACKLLADSDMPITDICFEVGYANISNFNRNFRQQRGLTPSLYRRWARQRIIDAPSPMDAS

Sequences:

>Translated_303_residues
MGATSSKRPVFEHILAEATDSFVWRLDDYPFKRMGWHIHPECEIHLIRESSGIELVGDHIGEFAPGRLTIVGGDLPHDWV
TSLSPGETVRGRDIVVQFDAGRWCQAAAILPELAMLEPFLARASRGLGFHGETREKGAQILESMGQARGLDRLCLLFRLL
ALLAGSHEYEILSSEDFMPNRDPAMVDTVQQVMSYLFDHFTSDIRLTDLANMVGMSESAFSRFFQKNSGNSFTDHVMKLR
LGRACKLLADSDMPITDICFEVGYANISNFNRNFRQQRGLTPSLYRRWARQRIIDAPSPMDAS
>Mature_302_residues
GATSSKRPVFEHILAEATDSFVWRLDDYPFKRMGWHIHPECEIHLIRESSGIELVGDHIGEFAPGRLTIVGGDLPHDWVT
SLSPGETVRGRDIVVQFDAGRWCQAAAILPELAMLEPFLARASRGLGFHGETREKGAQILESMGQARGLDRLCLLFRLLA
LLAGSHEYEILSSEDFMPNRDPAMVDTVQQVMSYLFDHFTSDIRLTDLANMVGMSESAFSRFFQKNSGNSFTDHVMKLRL
GRACKLLADSDMPITDICFEVGYANISNFNRNFRQQRGLTPSLYRRWARQRIIDAPSPMDAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34141; Mature: 34010

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGATSSKRPVFEHILAEATDSFVWRLDDYPFKRMGWHIHPECEIHLIRESSGIELVGDHI
CCCCCCCCHHHHHHHHHHHHHHEEECCCCCHHHCCCEECCCCEEEEEECCCCCEEHHHHH
GEFAPGRLTIVGGDLPHDWVTSLSPGETVRGRDIVVQFDAGRWCQAAAILPELAMLEPFL
CCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ARASRGLGFHGETREKGAQILESMGQARGLDRLCLLFRLLALLAGSHEYEILSSEDFMPN
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
RDPAMVDTVQQVMSYLFDHFTSDIRLTDLANMVGMSESAFSRFFQKNSGNSFTDHVMKLR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
LGRACKLLADSDMPITDICFEVGYANISNFNRNFRQQRGLTPSLYRRWARQRIIDAPSPM
HHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
DAS
CCC
>Mature Secondary Structure 
GATSSKRPVFEHILAEATDSFVWRLDDYPFKRMGWHIHPECEIHLIRESSGIELVGDHI
CCCCCCCHHHHHHHHHHHHHHEEECCCCCHHHCCCEECCCCEEEEEECCCCCEEHHHHH
GEFAPGRLTIVGGDLPHDWVTSLSPGETVRGRDIVVQFDAGRWCQAAAILPELAMLEPFL
CCCCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHH
ARASRGLGFHGETREKGAQILESMGQARGLDRLCLLFRLLALLAGSHEYEILSSEDFMPN
HHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
RDPAMVDTVQQVMSYLFDHFTSDIRLTDLANMVGMSESAFSRFFQKNSGNSFTDHVMKLR
CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHH
LGRACKLLADSDMPITDICFEVGYANISNFNRNFRQQRGLTPSLYRRWARQRIIDAPSPM
HHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC
DAS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA