| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
Click here to switch to the map view.
The map label for this gene is yvrD [H]
Identifier: 182679294
GI number: 182679294
Start: 2675226
End: 2676017
Strand: Reverse
Name: yvrD [H]
Synonym: Bind_2338
Alternate gene names: 182679294
Gene position: 2676017-2675226 (Counterclockwise)
Preceding gene: 182679295
Following gene: 182679293
Centisome position: 64.17
GC content: 59.22
Gene sequence:
>792_bases ATGGATATGGGTCTCGCGGGCAAGGTGGCGGTCGTCACCGGTGGGAGTGTCGGCATCGGACTGGCGGTGGCCGAGGGATT GGCGGCGGAAGGGGCGCATCTCGTCCTGGCCGCGCGCAATGCCGACCGGCTGAAGAAGGAGGCCGAACGTCTTGCCGCGG CTTTCAAGGTGCGTGTGTTTCCGGTGGCGGGTGATGTCGGCACAGCCGAAGGATGCAAAGCTTTGATCGGCGCCGTGCAG GATACATTCGGCGGCGCTGATATCCTCATCAATAATGCCGGGACCGGTTCCAACGAGACGATCATGGAAGCGCCCGACGA GGCCTGGCAATCTTATTGGGAACTGCATGTGATGGCGGCGGTTCGGCTGGCGCGCGGGCTGGTGCCGGGCATGCGGGCGC GCGGCGGCGGCGTCATTCTCCACAATGCCTCGATCTGCGCTGTTCAACCTCTGTGGTATGAGCCGATCTATAACGTCACC AAAGCGGCTTTGATGATGTTCAGCAAGACTTTGTCGACCGAGGTCGTGGGTGACAATATCCGCGTTAATTGCATCAATCC TGGCCTGATCCTGACACCTGATTGGGTTAATACAGCGAAGAAGCTCACCAGCGAGACGGGCGGACATTGGGAGGCCTATT TGCAGGGCGTCGCGGATGAATTTGCACCGATCAAACGGTTCGGCACGCCGGAAGAACTGGCGAATTTCTTCGTCTTTCTC TGCTCTGATAAGGCCAGTTACAGCGTCGGCTCGACCTATTTTGTCGATGGCGGCATGCTCAAGACGCTTTAA
Upstream 100 bases:
>100_bases GCGTCATAAGCAAATGGTCCTGTCAAAGAATGTCTGTGTCGCCAACGATTGATACGCAAGCATTGATCCTGGCTTGAACG ATAAACAAGAGGAAACACCA
Downstream 100 bases:
>100_bases AATTCCGGACACAGGCCTGCTTGATGTGGTTTACCTTCGTTGATGCATCGGCTATTGCAGACGTGAATTTATTGACGAAC GCAGGAGTTCCCGATGGCGG
Product: short-chain dehydrogenase/reductase SDR
Products: (3R)-hydroxyacyl-[acyl-carrier-protein]; NADP; NADPH; Proton; beta-ketoacyl-ACP [C]
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MDMGLAGKVAVVTGGSVGIGLAVAEGLAAEGAHLVLAARNADRLKKEAERLAAAFKVRVFPVAGDVGTAEGCKALIGAVQ DTFGGADILINNAGTGSNETIMEAPDEAWQSYWELHVMAAVRLARGLVPGMRARGGGVILHNASICAVQPLWYEPIYNVT KAALMMFSKTLSTEVVGDNIRVNCINPGLILTPDWVNTAKKLTSETGGHWEAYLQGVADEFAPIKRFGTPEELANFFVFL CSDKASYSVGSTYFVDGGMLKTL
Sequences:
>Translated_263_residues MDMGLAGKVAVVTGGSVGIGLAVAEGLAAEGAHLVLAARNADRLKKEAERLAAAFKVRVFPVAGDVGTAEGCKALIGAVQ DTFGGADILINNAGTGSNETIMEAPDEAWQSYWELHVMAAVRLARGLVPGMRARGGGVILHNASICAVQPLWYEPIYNVT KAALMMFSKTLSTEVVGDNIRVNCINPGLILTPDWVNTAKKLTSETGGHWEAYLQGVADEFAPIKRFGTPEELANFFVFL CSDKASYSVGSTYFVDGGMLKTL >Mature_263_residues MDMGLAGKVAVVTGGSVGIGLAVAEGLAAEGAHLVLAARNADRLKKEAERLAAAFKVRVFPVAGDVGTAEGCKALIGAVQ DTFGGADILINNAGTGSNETIMEAPDEAWQSYWELHVMAAVRLARGLVPGMRARGGGVILHNASICAVQPLWYEPIYNVT KAALMMFSKTLSTEVVGDNIRVNCINPGLILTPDWVNTAKKLTSETGGHWEAYLQGVADEFAPIKRFGTPEELANFFVFL CSDKASYSVGSTYFVDGGMLKTL
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=262, Percent_Identity=35.4961832061069, Blast_Score=140, Evalue=1e-33, Organism=Homo sapiens, GI126723750, Length=265, Percent_Identity=33.2075471698113, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI5031737, Length=257, Percent_Identity=33.852140077821, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI19923817, Length=260, Percent_Identity=29.6153846153846, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI7705925, Length=266, Percent_Identity=29.3233082706767, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=35.9375, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI126723191, Length=189, Percent_Identity=33.8624338624339, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=27.843137254902, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI40254992, Length=252, Percent_Identity=27.7777777777778, Blast_Score=85, Evalue=5e-17, Organism=Homo sapiens, GI10190704, Length=254, Percent_Identity=28.3464566929134, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI109715829, Length=250, Percent_Identity=26.4, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI31542939, Length=251, Percent_Identity=26.2948207171315, Blast_Score=81, Evalue=8e-16, Organism=Homo sapiens, GI20149619, Length=198, Percent_Identity=30.8080808080808, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI7705855, Length=192, Percent_Identity=27.6041666666667, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI15277342, Length=266, Percent_Identity=25.5639097744361, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI7657478, Length=193, Percent_Identity=29.5336787564767, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI302344755, Length=104, Percent_Identity=36.5384615384615, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=28.7878787878788, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI4503301, Length=259, Percent_Identity=29.3436293436293, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI226371731, Length=244, Percent_Identity=24.1803278688525, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4503817, Length=214, Percent_Identity=27.1028037383178, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI224922801, Length=172, Percent_Identity=26.1627906976744, Blast_Score=65, Evalue=9e-11, Organism=Escherichia coli, GI1787335, Length=257, Percent_Identity=32.295719844358, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI87082100, Length=260, Percent_Identity=30.3846153846154, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787905, Length=265, Percent_Identity=32.0754716981132, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=31.1284046692607, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1790717, Length=261, Percent_Identity=28.3524904214559, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=29.0196078431373, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI87082160, Length=262, Percent_Identity=31.2977099236641, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1789378, Length=260, Percent_Identity=31.1538461538462, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1786812, Length=263, Percent_Identity=26.9961977186312, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1787820, Length=183, Percent_Identity=26.2295081967213, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI2367175, Length=257, Percent_Identity=29.5719844357977, Blast_Score=70, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=32.1705426356589, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=32.8185328185328, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI17538486, Length=261, Percent_Identity=32.9501915708812, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=29.3233082706767, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17562910, Length=263, Percent_Identity=28.8973384030418, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17538480, Length=262, Percent_Identity=29.0076335877863, Blast_Score=107, Evalue=7e-24, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=28.735632183908, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI115534694, Length=256, Percent_Identity=30.46875, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=28.4090909090909, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.2238805970149, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=31.4814814814815, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17562990, Length=261, Percent_Identity=29.1187739463602, Blast_Score=102, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17551412, Length=273, Percent_Identity=28.2051282051282, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=29.2490118577075, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI25147288, Length=263, Percent_Identity=30.7984790874525, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=30.1587301587302, Blast_Score=97, Evalue=8e-21, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=28.6245353159851, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17562904, Length=277, Percent_Identity=27.4368231046931, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17555706, Length=267, Percent_Identity=29.2134831460674, Blast_Score=94, Evalue=5e-20, Organism=Caenorhabditis elegans, GI193204405, Length=274, Percent_Identity=27.7372262773723, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI17563726, Length=266, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=24.7191011235955, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI17562908, Length=267, Percent_Identity=28.0898876404494, Blast_Score=87, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17560220, Length=272, Percent_Identity=28.3088235294118, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17568967, Length=192, Percent_Identity=28.125, Blast_Score=67, Evalue=8e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=253, Percent_Identity=28.0632411067194, Blast_Score=82, Evalue=1e-16, Organism=Saccharomyces cerevisiae, GI6324126, Length=258, Percent_Identity=25.1937984496124, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=31.1827956989247, Blast_Score=64, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6322226, Length=196, Percent_Identity=28.0612244897959, Blast_Score=62, Evalue=1e-10, Organism=Drosophila melanogaster, GI23397609, Length=257, Percent_Identity=31.5175097276265, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI21355319, Length=263, Percent_Identity=31.5589353612167, Blast_Score=110, Evalue=1e-24, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=30.8300395256917, Blast_Score=107, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644339, Length=256, Percent_Identity=29.6875, Blast_Score=105, Evalue=3e-23, Organism=Drosophila melanogaster, GI28571526, Length=251, Percent_Identity=30.2788844621514, Blast_Score=104, Evalue=7e-23, Organism=Drosophila melanogaster, GI24643142, Length=258, Percent_Identity=28.2945736434109, Blast_Score=94, Evalue=6e-20, Organism=Drosophila melanogaster, GI24639444, Length=263, Percent_Identity=28.1368821292776, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI21358495, Length=193, Percent_Identity=28.4974093264249, Blast_Score=81, Evalue=6e-16, Organism=Drosophila melanogaster, GI28574402, Length=244, Percent_Identity=27.4590163934426, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24584744, Length=244, Percent_Identity=27.4590163934426, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=31.4720812182741, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI161076933, Length=258, Percent_Identity=27.5193798449612, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI24580925, Length=212, Percent_Identity=31.1320754716981, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584748, Length=243, Percent_Identity=27.1604938271605, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24665247, Length=205, Percent_Identity=28.780487804878, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI221331216, Length=205, Percent_Identity=28.780487804878, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI116007238, Length=137, Percent_Identity=35.7664233576642, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24641232, Length=220, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331218, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24665243, Length=205, Percent_Identity=28.2926829268293, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI281364494, Length=196, Percent_Identity=30.6122448979592, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21356301, Length=210, Percent_Identity=27.6190476190476, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI28571387, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24649181, Length=198, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007234, Length=192, Percent_Identity=31.7708333333333, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI17737361, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24640442, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI24644337, Length=259, Percent_Identity=26.6409266409266, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI21357673, Length=247, Percent_Identity=25.1012145748988, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.1.1.100 [C]
Molecular weight: Translated: 27781; Mature: 27781
Theoretical pI: Translated: 5.34; Mature: 5.34
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDMGLAGKVAVVTGGSVGIGLAVAEGLAAEGAHLVLAARNADRLKKEAERLAAAFKVRVF CCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE PVAGDVGTAEGCKALIGAVQDTFGGADILINNAGTGSNETIMEAPDEAWQSYWELHVMAA EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHHHHHH VRLARGLVPGMRARGGGVILHNASICAVQPLWYEPIYNVTKAALMMFSKTLSTEVVGDNI HHHHHHCCCCCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCE RVNCINPGLILTPDWVNTAKKLTSETGGHWEAYLQGVADEFAPIKRFGTPEELANFFVFL EEEEECCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEE CSDKASYSVGSTYFVDGGMLKTL ECCCCCCCCCCEEEECCCEEECC >Mature Secondary Structure MDMGLAGKVAVVTGGSVGIGLAVAEGLAAEGAHLVLAARNADRLKKEAERLAAAFKVRVF CCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHEEEEE PVAGDVGTAEGCKALIGAVQDTFGGADILINNAGTGSNETIMEAPDEAWQSYWELHVMAA EECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEECCCHHHHHHHHHHHHHHH VRLARGLVPGMRARGGGVILHNASICAVQPLWYEPIYNVTKAALMMFSKTLSTEVVGDNI HHHHHHCCCCCCCCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHEECCCE RVNCINPGLILTPDWVNTAKKLTSETGGHWEAYLQGVADEFAPIKRFGTPEELANFFVFL EEEEECCCEEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHEEEEE CSDKASYSVGSTYFVDGGMLKTL ECCCCCCCCCCEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NADPH [C]
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Oxoacyl-[acyl-carrier-protein]; NADPH; D-3-hydroxy-acyl-ACP; NADP [C]
Specific reaction: Oxoacyl-[acyl-carrier-protein] + NADPH = (3R)-hydroxyacyl-[acyl-carrier-protein] + NADP+ D-3-hydroxy-acyl-ACP + NADP = NADPH + Proton + beta-ketoacyl-ACP [C]
General reaction: Redox reaction [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9639930; 9384377 [H]