| Definition | Beijerinckia indica subsp. indica ATCC 9039 chromosome, complete genome. |
|---|---|
| Accession | NC_010581 |
| Length | 4,170,153 |
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The map label for this gene is hypF [H]
Identifier: 182678133
GI number: 182678133
Start: 1329272
End: 1331611
Strand: Direct
Name: hypF [H]
Synonym: Bind_1148
Alternate gene names: 182678133
Gene position: 1329272-1331611 (Clockwise)
Preceding gene: 182678132
Following gene: 182678135
Centisome position: 31.88
GC content: 60.6
Gene sequence:
>2340_bases ATGGAGACAATTGAGACCGAAATTTTATCTGTCACGGGATTGGTGCAGGGGGTTGGTTTTCGCCCCTTCGTCTGGCGTCT CGCGCAAAGGCTTGGCCTTTCCGGTACAGTCCGTAACTGCGGCAATGCGGTTGAAATTGTGGTTTGCGGGCCGCTCGACA AGCGCGATGCTTTGGCTGAAGCGCTGCGCGTGGAAGCTCCGCCCCGCGCACGCGTTGAGGGCGTGACGCGGATCCAAGGT TCTCCCTCGAACTATATGGATTTCTCCATCGCTCCGAGCGGACCCGGCGAGGTAACGGCTGGGATTGTTCCTGATCTTGC GACATGTCCTGCCTGTTGTGCCGAAATCTTTGATCCAGGGGCCCGGCGTTATCATTATGCCTTCACCAATTGCACGGATT GTGGCCCCCGTTTTTCCATTCTTTCTGGCCTGCCTTATGATCGTGCGCATACGACCATGGCGTCTTTCTCGCTTTGTCTT GCGTGCCGTGCTGACTATGAGAATCCCGCCGACCGCCGTTTTCATGCCGAGCCCATTGCTTGTCCTGATTGTGGCCCGCG TCTGCATTTTGTCGGAGGCGACGGCCAAGATTATGTTGGTAATCAGGCTTTCGAGGTGGCTCTTGCCCTGTTGCGGTGTG GCGGTATTCTCGCGCTGAAAGGGATCGGCGGTTATCACCTTGCCTGCGATGCCACGCGGGAGGATAGCGTGCAGCTTTTG CGCGCGCGCAAGCATCGCCCGACCAAGCCGCTGGCTGTGATGATGCGTGATCTCGCCACCGCCGCCCGCTATTGTGCGCT GACGCAGGAAGAAAGGCAGGCTCTCGTTGATCCTTCTGCGCCCATCGTCCTGGTGAACCGGCAGGACGATAGCTCTCTCG CGCCTTCTCTTGCACCTTCTCTTTCTCCCGGCCTCGATCGGCTGGGCGTCCTGCTTCCCTATACGCCTTTGCATCATCTG TTGCTGGACGCCCTGGCTTTTCCGCTCGTCATGAGCAGTGGCAATCGCTCTGGAGCCCCGCAGGTTTTCGAGGATGATGT GGCCTTGCGCGATCTGGCGGAGATTGCCGATGGCTGGCTGATGCATGACCGGCCCATCGCGCGCCGCCTTGATGATAGCG TTGTCATGGTGAGTGCGGGGGCAAAGCGTGTCCTGCGGCGTGGGCGCGGTCTCGCTCCAGAACCCTTTCTACTCGCGGAA GATTTTTTGAAGGCGCCGCCCATTTTGGCCCTGGGCGCTGATCTCAAATCAGCATTCTGCCTGATCCAAGGCGGGCGCGC TTTGCTGTCGCATCATCTTGGTGATTTCAACGATCCTGACAGCGCAGCCACGATGGATGCGGCGATCACAGACTATAGCG CCCTGTTTACGCATCGGCTGGCGGCGATCGCGATCGATCTGCATCCAGATTATCGCTCAGCCGATCTTGGGCGCAGACTG GCGCATGATCGTTCCTTGCCCTTGATCGCGGTTCAGCATCACCATGCTCATGTCGCCGCCGTCATGGCGGATCATGGTCT GCCGCGAAGCGCCGGGCCAGTGATCGGCATCGTGCTCGATGGTTTGGGCTTCGGCGACGATGGCACGATCTGGGGAGCGG AAATACTGCTCTGTGATTATGCGCGAAGCCGCCGGCTCGCCCGTCTGCGCCCCGCGCCCATGCCGGGCAGTGATCGCGCC AGCCTTGAGCCGTGGCGCAATCTCCTCGCTTCGTTGGATGCCGCTTTCGGTCCCCAGGAAAGTATGAGCCGCCTGCACGC CGCCGGGCGAGGTCCAGTGCTGGCAGATCGCAAAATCTCGGCCTTGCGCGCGATGATCAAGGCTGGTTTCAATGCGCCGC TCGCCAGCTCCGCAGGGCGATTGTTCGATGCCATGGCGGCCTTGCTGGGCGTCGCGCCGGAAATACAGACTTTCGAAGCC GAAGCGGCGATGACTCTGGAAGCACTCGCGCGTCAAGCTTCGGGCGAAGCCTCAAACCTTCCCTTCCTTGTCACTGAGGT CGATGGCCTTAAGGAAATCGATCCCGAGCCGATGTGGGCTGCCGCCTTGCATCGGCTTGGAGCGGGTGAGGCGCCTTTGA TGATCGCAGCGGGTTTTCATGCCGGTCTCGCGGCCATTTTTGCGCAAGTGGCTGTGGACGAGGCGCGACGGCAGGGGATC GGGCAGATCGTTCTGGCCGGCGGGGTCATGCAGAATGCATTGTTATTCGAGGCGCTAACAGCCCATGTGAGAGCCGCAGG CCTTGGCGTCCTGGCTCCGCTTCGCGCTCCCGCCAATGATGGCGGCCTTGCTCTTGGGCAGGCGGTGATCGCCTCCATCC GACTAATGGAGGCAGATTAA
Upstream 100 bases:
>100_bases TGCGCCCGTTCAGTCCGGCGAGACCACGCCAGTTTCCGTGCAGCATATCGTGCGCTCGTTTGATCCCTGCATGGCTTGCA CGGTGCATTGAGCCCGTCTG
Downstream 100 bases:
>100_bases ACGGCAACGCGTGTCCGCGCGGTTTCAAAGATCTTTCTCATAGATCCTATGGATCTTGCCGACCTCGCCGCCGATCATTT CGATCATGCGGCGCATCGGG
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues METIETEILSVTGLVQGVGFRPFVWRLAQRLGLSGTVRNCGNAVEIVVCGPLDKRDALAEALRVEAPPRARVEGVTRIQG SPSNYMDFSIAPSGPGEVTAGIVPDLATCPACCAEIFDPGARRYHYAFTNCTDCGPRFSILSGLPYDRAHTTMASFSLCL ACRADYENPADRRFHAEPIACPDCGPRLHFVGGDGQDYVGNQAFEVALALLRCGGILALKGIGGYHLACDATREDSVQLL RARKHRPTKPLAVMMRDLATAARYCALTQEERQALVDPSAPIVLVNRQDDSSLAPSLAPSLSPGLDRLGVLLPYTPLHHL LLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWLMHDRPIARRLDDSVVMVSAGAKRVLRRGRGLAPEPFLLAE DFLKAPPILALGADLKSAFCLIQGGRALLSHHLGDFNDPDSAATMDAAITDYSALFTHRLAAIAIDLHPDYRSADLGRRL AHDRSLPLIAVQHHHAHVAAVMADHGLPRSAGPVIGIVLDGLGFGDDGTIWGAEILLCDYARSRRLARLRPAPMPGSDRA SLEPWRNLLASLDAAFGPQESMSRLHAAGRGPVLADRKISALRAMIKAGFNAPLASSAGRLFDAMAALLGVAPEIQTFEA EAAMTLEALARQASGEASNLPFLVTEVDGLKEIDPEPMWAAALHRLGAGEAPLMIAAGFHAGLAAIFAQVAVDEARRQGI GQIVLAGGVMQNALLFEALTAHVRAAGLGVLAPLRAPANDGGLALGQAVIASIRLMEAD
Sequences:
>Translated_779_residues METIETEILSVTGLVQGVGFRPFVWRLAQRLGLSGTVRNCGNAVEIVVCGPLDKRDALAEALRVEAPPRARVEGVTRIQG SPSNYMDFSIAPSGPGEVTAGIVPDLATCPACCAEIFDPGARRYHYAFTNCTDCGPRFSILSGLPYDRAHTTMASFSLCL ACRADYENPADRRFHAEPIACPDCGPRLHFVGGDGQDYVGNQAFEVALALLRCGGILALKGIGGYHLACDATREDSVQLL RARKHRPTKPLAVMMRDLATAARYCALTQEERQALVDPSAPIVLVNRQDDSSLAPSLAPSLSPGLDRLGVLLPYTPLHHL LLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWLMHDRPIARRLDDSVVMVSAGAKRVLRRGRGLAPEPFLLAE DFLKAPPILALGADLKSAFCLIQGGRALLSHHLGDFNDPDSAATMDAAITDYSALFTHRLAAIAIDLHPDYRSADLGRRL AHDRSLPLIAVQHHHAHVAAVMADHGLPRSAGPVIGIVLDGLGFGDDGTIWGAEILLCDYARSRRLARLRPAPMPGSDRA SLEPWRNLLASLDAAFGPQESMSRLHAAGRGPVLADRKISALRAMIKAGFNAPLASSAGRLFDAMAALLGVAPEIQTFEA EAAMTLEALARQASGEASNLPFLVTEVDGLKEIDPEPMWAAALHRLGAGEAPLMIAAGFHAGLAAIFAQVAVDEARRQGI GQIVLAGGVMQNALLFEALTAHVRAAGLGVLAPLRAPANDGGLALGQAVIASIRLMEAD >Mature_779_residues METIETEILSVTGLVQGVGFRPFVWRLAQRLGLSGTVRNCGNAVEIVVCGPLDKRDALAEALRVEAPPRARVEGVTRIQG SPSNYMDFSIAPSGPGEVTAGIVPDLATCPACCAEIFDPGARRYHYAFTNCTDCGPRFSILSGLPYDRAHTTMASFSLCL ACRADYENPADRRFHAEPIACPDCGPRLHFVGGDGQDYVGNQAFEVALALLRCGGILALKGIGGYHLACDATREDSVQLL RARKHRPTKPLAVMMRDLATAARYCALTQEERQALVDPSAPIVLVNRQDDSSLAPSLAPSLSPGLDRLGVLLPYTPLHHL LLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWLMHDRPIARRLDDSVVMVSAGAKRVLRRGRGLAPEPFLLAE DFLKAPPILALGADLKSAFCLIQGGRALLSHHLGDFNDPDSAATMDAAITDYSALFTHRLAAIAIDLHPDYRSADLGRRL AHDRSLPLIAVQHHHAHVAAVMADHGLPRSAGPVIGIVLDGLGFGDDGTIWGAEILLCDYARSRRLARLRPAPMPGSDRA SLEPWRNLLASLDAAFGPQESMSRLHAAGRGPVLADRKISALRAMIKAGFNAPLASSAGRLFDAMAALLGVAPEIQTFEA EAAMTLEALARQASGEASNLPFLVTEVDGLKEIDPEPMWAAALHRLGAGEAPLMIAAGFHAGLAAIFAQVAVDEARRQGI GQIVLAGGVMQNALLFEALTAHVRAAGLGVLAPLRAPANDGGLALGQAVIASIRLMEAD
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=773, Percent_Identity=43.72574385511, Blast_Score=513, Evalue=1e-146,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 82728; Mature: 82728
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure METIETEILSVTGLVQGVGFRPFVWRLAQRLGLSGTVRNCGNAVEIVVCGPLDKRDALAE CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCCHHHHHHH ALRVEAPPRARVEGVTRIQGSPSNYMDFSIAPSGPGEVTAGIVPDLATCPACCAEIFDPG HHHCCCCCCHHHCCHHEECCCCCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHHCCCC ARRYHYAFTNCTDCGPRFSILSGLPYDRAHTTMASFSLCLACRADYENPADRRFHAEPIA CCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC CPDCGPRLHFVGGDGQDYVGNQAFEVALALLRCGGILALKGIGGYHLACDATREDSVQLL CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHH RARKHRPTKPLAVMMRDLATAARYCALTQEERQALVDPSAPIVLVNRQDDSSLAPSLAPS HHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC LSPGLDRLGVLLPYTPLHHLLLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWL CCCCHHHHCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCE MHDRPIARRLDDSVVMVSAGAKRVLRRGRGLAPEPFLLAEDFLKAPPILALGADLKSAFC ECCCHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHH LIQGGRALLSHHLGDFNDPDSAATMDAAITDYSALFTHRLAAIAIDLHPDYRSADLGRRL HHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHH AHDRSLPLIAVQHHHAHVAAVMADHGLPRSAGPVIGIVLDGLGFGDDGTIWGAEILLCDY HHCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHEEEHH ARSRRLARLRPAPMPGSDRASLEPWRNLLASLDAAFGPQESMSRLHAAGRGPVLADRKIS HHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH ALRAMIKAGFNAPLASSAGRLFDAMAALLGVAPEIQTFEAEAAMTLEALARQASGEASNL HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PFLVTEVDGLKEIDPEPMWAAALHRLGAGEAPLMIAAGFHAGLAAIFAQVAVDEARRQGI CEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCC GQIVLAGGVMQNALLFEALTAHVRAAGLGVLAPLRAPANDGGLALGQAVIASIRLMEAD CEEEEECHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCC >Mature Secondary Structure METIETEILSVTGLVQGVGFRPFVWRLAQRLGLSGTVRNCGNAVEIVVCGPLDKRDALAE CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEECCCCHHHHHHH ALRVEAPPRARVEGVTRIQGSPSNYMDFSIAPSGPGEVTAGIVPDLATCPACCAEIFDPG HHHCCCCCCHHHCCHHEECCCCCCCEEEEECCCCCCCEECCCCCCHHHHHHHHHHHCCCC ARRYHYAFTNCTDCGPRFSILSGLPYDRAHTTMASFSLCLACRADYENPADRRFHAEPIA CCEEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC CPDCGPRLHFVGGDGQDYVGNQAFEVALALLRCGGILALKGIGGYHLACDATREDSVQLL CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHH RARKHRPTKPLAVMMRDLATAARYCALTQEERQALVDPSAPIVLVNRQDDSSLAPSLAPS HHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC LSPGLDRLGVLLPYTPLHHLLLDALAFPLVMSSGNRSGAPQVFEDDVALRDLAEIADGWL CCCCHHHHCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCE MHDRPIARRLDDSVVMVSAGAKRVLRRGRGLAPEPFLLAEDFLKAPPILALGADLKSAFC ECCCHHHHHCCCCEEEEECCHHHHHHCCCCCCCCCCHHHHHHHCCCCCEEECCCHHHHHH LIQGGRALLSHHLGDFNDPDSAATMDAAITDYSALFTHRLAAIAIDLHPDYRSADLGRRL HHHCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHHHHH AHDRSLPLIAVQHHHAHVAAVMADHGLPRSAGPVIGIVLDGLGFGDDGTIWGAEILLCDY HHCCCCCEEEEECCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCEEHHHHEEEHH ARSRRLARLRPAPMPGSDRASLEPWRNLLASLDAAFGPQESMSRLHAAGRGPVLADRKIS HHHCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHH ALRAMIKAGFNAPLASSAGRLFDAMAALLGVAPEIQTFEAEAAMTLEALARQASGEASNL HHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC PFLVTEVDGLKEIDPEPMWAAALHRLGAGEAPLMIAAGFHAGLAAIFAQVAVDEARRQGI CEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCC GQIVLAGGVMQNALLFEALTAHVRAAGLGVLAPLRAPANDGGLALGQAVIASIRLMEAD CEEEEECHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8497190; 9492269 [H]