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The map label for this gene is ybeY [C]

Identifier: 182678043

GI number: 182678043

Start: 1213638

End: 1214255

Strand: Direct

Name: ybeY [C]

Synonym: Bind_1057

Alternate gene names: 182678043

Gene position: 1213638-1214255 (Clockwise)

Preceding gene: 182678042

Following gene: 182678044

Centisome position: 29.1

GC content: 60.52

Gene sequence:

>618_bases
ATGGTACCGCTGATCGATATCGCGGTCGAAAGTCCCCGCTGGACCGAAGCGGGAAATGAGGGAGAGGACCCGCTTTCTCT
CGACGCGCTCGTCGAGGCGGCGATCGGTGCCGCCGTGGCGCGCGCCGGGATCGCTTTGCATGCGGAGGCGGAAGTCAGCC
TGCTCTTTTGCGACGATGCCTTCATTCGGGGCTTGAACCACCAATGGCGTGGCCTCGATAAGCCGACCAATGTCCTGTCC
TTTCCGAGCGATGAGGACCTTGAGGACGCGCGGCTTCTTGGTGACATTATCATTGCCTTTGAAACCTCGGCTGGCGAGGC
CAAAGCGGAAGCCAAGAGCTTGGCCGCCCATGTGTCGCATCTTGTCGTGCATGGCTTTCTGCATCTCATCGGCTATGACC
ACGAGGAGGCAGAAGAAGCCGAAGAAATGGAAAGGATGGAGCAAGTGATCCTGGCGGATCTCGGCATTGCCGATCCCTAT
CATGGCACCGCGCCCGTGGCGCCGGGGGGTGAAGCACAGGTGCCGAACGAGGCATTGGAAACGAGCGGGAAGCGCCAAGA
CCATTCGCTTGGTGAGATTCTCCCAGGGGGAATGTCGAGGCGGCTGGCAGGATCATGA

Upstream 100 bases:

>100_bases
GATCTGGTGCGCCGTATCGTCGGCGCTTATGAAGCCGCGTCGCGCGGCGACAACGAGTCGGCAAGACCCATCGGGAGAGC
ATGACCCGGGAGAGTTTATC

Downstream 100 bases:

>100_bases
GTGAACGCGACACCTATGCGGCAGGTGAAAATGCCGTGCCTGATCGGGGCGGGCAGGGCCAACGGCCCAATCTGATTGAT
CGCTTGCGCCTTTTGTTCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MVPLIDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDAFIRGLNHQWRGLDKPTNVLS
FPSDEDLEDARLLGDIIIAFETSAGEAKAEAKSLAAHVSHLVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY
HGTAPVAPGGEAQVPNEALETSGKRQDHSLGEILPGGMSRRLAGS

Sequences:

>Translated_205_residues
MVPLIDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDAFIRGLNHQWRGLDKPTNVLS
FPSDEDLEDARLLGDIIIAFETSAGEAKAEAKSLAAHVSHLVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY
HGTAPVAPGGEAQVPNEALETSGKRQDHSLGEILPGGMSRRLAGS
>Mature_205_residues
MVPLIDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDAFIRGLNHQWRGLDKPTNVLS
FPSDEDLEDARLLGDIIIAFETSAGEAKAEAKSLAAHVSHLVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPY
HGTAPVAPGGEAQVPNEALETSGKRQDHSLGEILPGGMSRRLAGS

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=116, Percent_Identity=48.2758620689655, Blast_Score=88, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_BEII9 (B2IIK7)

Other databases:

- EMBL:   CP001016
- RefSeq:   YP_001832189.1
- GeneID:   6200530
- GenomeReviews:   CP001016_GR
- KEGG:   bid:Bind_1057
- HOGENOM:   HBG734136
- OMA:   IENASEP
- ProtClustDB:   CLSK2405377
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 21801; Mature: 21801

Theoretical pI: Translated: 4.17; Mature: 4.17

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPLIDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDA
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECHH
FIRGLNHQWRGLDKPTNVLSFPSDEDLEDARLLGDIIIAFETSAGEAKAEAKSLAAHVSH
HHHCCCCHHCCCCCCCCEECCCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHH
LVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPYHGTAPVAPGGEAQVPNEALE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
TSGKRQDHSLGEILPGGMSRRLAGS
CCCCCCCCCHHHHCCCCCCHHCCCC
>Mature Secondary Structure
MVPLIDIAVESPRWTEAGNEGEDPLSLDALVEAAIGAAVARAGIALHAEAEVSLLFCDDA
CCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCCEEEEEEECHH
FIRGLNHQWRGLDKPTNVLSFPSDEDLEDARLLGDIIIAFETSAGEAKAEAKSLAAHVSH
HHHCCCCHHCCCCCCCCEECCCCCCCHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHH
LVVHGFLHLIGYDHEEAEEAEEMERMEQVILADLGIADPYHGTAPVAPGGEAQVPNEALE
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHH
TSGKRQDHSLGEILPGGMSRRLAGS
CCCCCCCCCHHHHCCCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA