| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is pgmB [H]
Identifier: 170756836
GI number: 170756836
Start: 3061951
End: 3062622
Strand: Reverse
Name: pgmB [H]
Synonym: CLD_1713
Alternate gene names: 170756836
Gene position: 3062622-3061951 (Counterclockwise)
Preceding gene: 170756907
Following gene: 170757789
Centisome position: 77.37
GC content: 29.02
Gene sequence:
>672_bases ATGAACATAAAGGGTGTAATATTTGATTTTAATGGAACTATGTTCTATGATGGGGAATTTCAAGAAACATCTTGGAGAAG ATATTTACAAAGAAAAATAGGTAGAAAAGTTACAGATGATGAATTTCAAGAATACGTTCATGGCAGAAATGCAGATGCTA CATTACCATATTTTTTAGGTACAGAGTTGTCTAAAAAAGAAATAGAAGAATTAGCAGAAGAAAAAGAAGTAACATATCGT GAATTATGCCTAGCAGATAAGAATAAATTCAAATTAGCTAATGGATTAGTAGAGTTTTTAAATTATTTAAAAGAAAGTAA AATTCCTTTTACAATCGCTACTGCTTCAGGATTGAATAATGTTAAATTCTTTTTTGAGCATTTAGATTTAGCAAAATGGT TTAATATATGCAATGTGGTGTATGATGATGGAACAATTCCAGGAAAGCCAGAACCAGAAATTTATATTAAGGCTGCTAAT AAAATTGGAATTCATATAAATGAATGTATGGTTTTTGAAGATGCAAAGTCTGGTATAATGTCAGCACATAGAGCTGGTGC TTACAAAATAGTTGGAGTTGCTTCTATGCTTGATAAAGAAGAAATGTTAAAAATAGAAGGTGTAGATGAGGTAATTGAAG ATTATACAAACGTTATAAATTTACTAAGATAA
Upstream 100 bases:
>100_bases GTTATAATTAATTCATGATAATAAGATAAAGTGGAGTAAAAATTATTTGTATAGGACATACAGATAAATAGTAATTTATA AGAAAGAGAGTAGATTTATT
Downstream 100 bases:
>100_bases ATTCCAATTTATAGAGCTGAAATAACATAATTTTAGCTTTAGTTATATCGTATCTTTTTTATATTAAGATGCATGATTAA AATATTTTTAATGAAGGCAT
Product: HAD family hydrolase
Products: NA
Alternate protein names: Beta-PGM [H]
Number of amino acids: Translated: 223; Mature: 223
Protein sequence:
>223_residues MNIKGVIFDFNGTMFYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADATLPYFLGTELSKKEIEELAEEKEVTYR ELCLADKNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIEGVDEVIEDYTNVINLLR
Sequences:
>Translated_223_residues MNIKGVIFDFNGTMFYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADATLPYFLGTELSKKEIEELAEEKEVTYR ELCLADKNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIEGVDEVIEDYTNVINLLR >Mature_223_residues MNIKGVIFDFNGTMFYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADATLPYFLGTELSKKEIEELAEEKEVTYR ELCLADKNKFKLANGLVEFLNYLKESKIPFTIATASGLNNVKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAAN KIGIHINECMVFEDAKSGIMSAHRAGAYKIVGVASMLDKEEMLKIEGVDEVIEDYTNVINLLR
Specific function: Reversible transformation of glucose 6-phosphate and beta-glucose 1-phosphate [H]
COG id: COG0637
COG function: function code R; Predicted phosphatase/phosphohexomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family [H]
Homologues:
Organism=Escherichia coli, GI87082080, Length=218, Percent_Identity=24.7706422018349, Blast_Score=69, Evalue=3e-13, Organism=Drosophila melanogaster, GI116008157, Length=142, Percent_Identity=28.8732394366197, Blast_Score=69, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010976 - InterPro: IPR010972 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006402 - InterPro: IPR005833 [H]
Pfam domain/function: PF00702 Hydrolase [H]
EC number: =5.4.2.6 [H]
Molecular weight: Translated: 25608; Mature: 25608
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIKGVIFDFNGTMFYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADATLPYFLG CCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHC TELSKKEIEELAEEKEVTYRELCLADKNKFKLANGLVEFLNYLKESKIPFTIATASGLNN CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH VKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAANKIGIHINECMVFEDAKSGIM HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCEEEEEEHHEEEEHHHHHHHH SAHRAGAYKIVGVASMLDKEEMLKIEGVDEVIEDYTNVINLLR HHHHCCCCCEEHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHCC >Mature Secondary Structure MNIKGVIFDFNGTMFYDGEFQETSWRRYLQRKIGRKVTDDEFQEYVHGRNADATLPYFLG CCCCEEEEECCCEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHC TELSKKEIEELAEEKEVTYRELCLADKNKFKLANGLVEFLNYLKESKIPFTIATASGLNN CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCH VKFFFEHLDLAKWFNICNVVYDDGTIPGKPEPEIYIKAANKIGIHINECMVFEDAKSGIM HHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCEEEEECCEEEEEEHHEEEEHHHHHHHH SAHRAGAYKIVGVASMLDKEEMLKIEGVDEVIEDYTNVINLLR HHHHCCCCCEEHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9084169; 11337471 [H]