| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170756907
Identifier: 170756907
GI number: 170756907
Start: 3062826
End: 3063356
Strand: Reverse
Name: 170756907
Synonym: CLD_1712
Alternate gene names: NA
Gene position: 3063356-3062826 (Counterclockwise)
Preceding gene: 170755781
Following gene: 170756836
Centisome position: 77.39
GC content: 27.12
Gene sequence:
>531_bases ATGTATATTATAAATTCAAATTTAAAATTTAGAGGATTATCTTATGGTAATAATCCTAAAATGATTATATTACATCATGC AGAAGTTTCAGGCTGCAGCATACAAGATATTCATTCTTGGCATTTAAATAATGGTTGGAGTGGCTGTGGCTATAATTATT TTATAAAGAAGGATGGATCTATTTATAAAGGTAGACCAGATAAGGCTATAGGTGCTCATTGTTTAAGTTATAATAGTGTA TCTATTGGCATTTGTACAGAAGGTAGATTCAATATAGAAAGAATGGGAGAGGCTCAATATAATTCTTTAAAAGAGTTAAC TCGCTACTTACAAAATAAATATAATATAAACAAAATATATGCACATAGAGAATTAAATGAAACAGATTGCCCAGGAAAAA ACTTTCCACTAAGCAAAATAAAAAATGAATGTTTAGGTGGAACTTCAATTAGTAATAATAAAATAATCAAAAGCTATCCT GGATATTTACTTAAGTATAATCCTAATAGATTTGATGGTAATACAAAATAA
Upstream 100 bases:
>100_bases GAATTTTTAAGGTAAATTAAAGTTCAATTAGAATAATTATTTTTATTTATTGGTACAGTAATAAAAAGGTTTTATAAGTT TAAATAAAAGGGGAATGGTT
Downstream 100 bases:
>100_bases ATTGCAGAACATAGGCTATAGTGTAGGGAGGTATGGATATTTTGGAGATGAAAACGACGTAAATGTTATTTGAAAATTGA ATAATACGGTATTTACAAAA
Product: prophage LambdaCh01, N-acetylmuramoyl-L-alanine amidase
Products: NA
Alternate protein names: Prophage; Negative Regulator Of Beta-Lactamase Expression; Phage Related N-Acetylmuramoyl-L-Alanine Amidase
Number of amino acids: Translated: 176; Mature: 176
Protein sequence:
>176_residues MYIINSNLKFRGLSYGNNPKMIILHHAEVSGCSIQDIHSWHLNNGWSGCGYNYFIKKDGSIYKGRPDKAIGAHCLSYNSV SIGICTEGRFNIERMGEAQYNSLKELTRYLQNKYNINKIYAHRELNETDCPGKNFPLSKIKNECLGGTSISNNKIIKSYP GYLLKYNPNRFDGNTK
Sequences:
>Translated_176_residues MYIINSNLKFRGLSYGNNPKMIILHHAEVSGCSIQDIHSWHLNNGWSGCGYNYFIKKDGSIYKGRPDKAIGAHCLSYNSV SIGICTEGRFNIERMGEAQYNSLKELTRYLQNKYNINKIYAHRELNETDCPGKNFPLSKIKNECLGGTSISNNKIIKSYP GYLLKYNPNRFDGNTK >Mature_176_residues MYIINSNLKFRGLSYGNNPKMIILHHAEVSGCSIQDIHSWHLNNGWSGCGYNYFIKKDGSIYKGRPDKAIGAHCLSYNSV SIGICTEGRFNIERMGEAQYNSLKELTRYLQNKYNINKIYAHRELNETDCPGKNFPLSKIKNECLGGTSISNNKIIKSYP GYLLKYNPNRFDGNTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI24651867, Length=134, Percent_Identity=32.8358208955224, Blast_Score=78, Evalue=3e-15, Organism=Drosophila melanogaster, GI24651865, Length=132, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24586649, Length=132, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI281365921, Length=127, Percent_Identity=30.7086614173228, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI45551539, Length=127, Percent_Identity=30.7086614173228, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574426, Length=129, Percent_Identity=35.6589147286822, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24645946, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI21356551, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI24645949, Length=124, Percent_Identity=32.258064516129, Blast_Score=67, Evalue=6e-12, Organism=Drosophila melanogaster, GI281365923, Length=129, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=9e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20042; Mature: 20042
Theoretical pI: Translated: 9.54; Mature: 9.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 3.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYIINSNLKFRGLSYGNNPKMIILHHAEVSGCSIQDIHSWHLNNGWSGCGYNYFIKKDGS CEEECCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC IYKGRPDKAIGAHCLSYNSVSIGICTEGRFNIERMGEAQYNSLKELTRYLQNKYNINKIY EECCCCCCCHHHEEEECCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEE AHRELNETDCPGKNFPLSKIKNECLGGTSISNNKIIKSYPGYLLKYNPNRFDGNTK EECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC >Mature Secondary Structure MYIINSNLKFRGLSYGNNPKMIILHHAEVSGCSIQDIHSWHLNNGWSGCGYNYFIKKDGS CEEECCCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCCCCCCEEEEEECCCC IYKGRPDKAIGAHCLSYNSVSIGICTEGRFNIERMGEAQYNSLKELTRYLQNKYNINKIY EECCCCCCCHHHEEEECCCEEEEEECCCCCCHHHCCCHHHHHHHHHHHHHHCCCCCEEEE AHRELNETDCPGKNFPLSKIKNECLGGTSISNNKIIKSYPGYLLKYNPNRFDGNTK EECCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA