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The map label for this gene is rplY [H]

Identifier: 170754875

GI number: 170754875

Start: 3496071

End: 3496640

Strand: Reverse

Name: rplY [H]

Synonym: CLD_1314

Alternate gene names: 170754875

Gene position: 3496640-3496071 (Counterclockwise)

Preceding gene: 170755676

Following gene: 170757732

Centisome position: 88.34

GC content: 29.3

Gene sequence:

>570_bases
ATGAGTAGTGCTTCACTTACTGCTATAGTAAGAGAAAAGAGTGGTAAAAAATGCAGAAAAGAAGGGTTTGCACCAGGAAT
AATTTATGGAGCAGAAATGAAAGAATCTATAAAGGTTAAATTTGAAGTTCCTAGCCTTTTAAGATATTTAAATAAAGCTG
GTATTAATTCAAGATTATGGCTTAATATTGGCAATAAAAAAGAGTATGTATTAATTAAGGAAATACAAAAAGAATCAACA
ACAGGTGAGATACTTAATATAGATATGCAGGCTGTTTCACATGATGAAGTTATAAAAAATAGTATACCTGTAAAATTTGA
AGGAAAAGAACAATTAGAACATAAAGGATTTTTATTAGAAGAATTTACTCCATATATAGAGGTAGCTGGAAAAGTAGGTA
TACTTCCAGAAATAATAGTGGTAAGTGTTGGGGAAAATCAACCAGGGGATAATATAAAAGTGTCAGATATAAAATTAGAT
GAGGATATAAAATTATATACAGACCCAGAAGAATTACTAGCTACAGTATCTTATAATGGAAAAGGTACAGTTGAAGAAAC
TGTAAGTTAA

Upstream 100 bases:

>100_bases
TGAAGTAATTTAAATGTAAATTATACTTATATATAATGATTATAATCTAATAAGAATATAATTACTAATGACTTTCGTAA
TGGGATGGGAGGAATTTTAT

Downstream 100 bases:

>100_bases
AATAAGAAGTTTTAAAGATTAGGTTTTCTAATTTATTTTATGAGATTTATATAGATTTGCTTTTATTTCTCGTAAATAGA
ATTAGAGAACCTAATTTTAT

Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Products: NA

Alternate protein names: General stress protein CTC [H]

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKEST
TGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENQPGDNIKVSDIKLD
EDIKLYTDPEELLATVSYNGKGTVEETVS

Sequences:

>Translated_189_residues
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKEST
TGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENQPGDNIKVSDIKLD
EDIKLYTDPEELLATVSYNGKGTVEETVS
>Mature_188_residues
SSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLWLNIGNKKEYVLIKEIQKESTT
GEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLEEFTPYIEVAGKVGILPEIIVVSVGENQPGDNIKVSDIKLDE
DIKLYTDPEELLATVSYNGKGTVEETVS

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance [H]

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- ProDom:   PD012503 [H]

Pfam domain/function: PF01386 Ribosomal_L25p [H]

EC number: NA

Molecular weight: Translated: 21000; Mature: 20869

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLW
CCCCCEEEEEECCCCCHHHHCCCCCCEEECCCCCCEEEEEEECHHHHHHHHHCCCCCEEE
LNIGNKKEYVLIKEIQKESTTGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLE
EEECCCCEEEEEEEHHCCCCCCEEEEEEHHHCCHHHHHHCCCCEEECCHHHHHHCCEEHH
EFTPYIEVAGKVGILPEIIVVSVGENQPGDNIKVSDIKLDEDIKLYTDPEELLATVSYNG
HCCCHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEEEECHHHHEEEEECCC
KGTVEETVS
CCCHHCCCC
>Mature Secondary Structure 
SSASLTAIVREKSGKKCRKEGFAPGIIYGAEMKESIKVKFEVPSLLRYLNKAGINSRLW
CCCCEEEEEECCCCCHHHHCCCCCCEEECCCCCCEEEEEEECHHHHHHHHHCCCCCEEE
LNIGNKKEYVLIKEIQKESTTGEILNIDMQAVSHDEVIKNSIPVKFEGKEQLEHKGFLLE
EEECCCCEEEEEEEHHCCCCCCEEEEEEHHHCCHHHHHHCCCCEEECCHHHHHHCCEEHH
EFTPYIEVAGKVGILPEIIVVSVGENQPGDNIKVSDIKLDEDIKLYTDPEELLATVSYNG
HCCCHHEECCCCCCCCEEEEEEECCCCCCCCEEEEEEEECCCEEEEECHHHHEEEEECCC
KGTVEETVS
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12552129 [H]