| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755676
Identifier: 170755676
GI number: 170755676
Start: 3496807
End: 3497421
Strand: Reverse
Name: 170755676
Synonym: CLD_1313
Alternate gene names: NA
Gene position: 3497421-3496807 (Counterclockwise)
Preceding gene: 170755056
Following gene: 170754875
Centisome position: 88.36
GC content: 23.09
Gene sequence:
>615_bases ATGCCTAAAGCCTTAATAGGAACTGCCATTTCAGCTACAGCTATAATAATAGGGGCTATAATAGGTGGAATATGGAGTTC GTGCATTAATAAAAAAACTATTACTAAGAATGAAGAAATACAAAAGCATATATTAGAAGAAAATAAAAAAATAGATAAGG TATACTATAAAGATAAATTTAAGGAAAGTGGAAGAACCGTAAGATTAGATATATGTACAGCAATTTTTGAGGGAATAAGA ACTATAAAAAAAATTAAGCAAAATAAAGAAGAATATTATCCTGTTTGCATTTCTATAAATAGAAATTATTATAGAGATAT AGCTGTATTAACTAAAAAATTTACTTTAAGAGAAATAAGCTATATAAATCAATTATATGGAATAATAGATAAGATAAATT ATGATGTAAAGAAGATAGATTATAGCAATAAGAATAGTTGGCTCAATATATTGGTAGATTATGAAATACTGTTAAAAAAA GTATATGGAAATAATTACAAGAAAATATTAGAGGTAGATATAGAAGAATGTAATTATGATAACTTAATAGATAACAATAT AATAAAGGAAGGATATAGAGATGTTCTTATAAAGTTAAATAATATTATAGAATAA
Upstream 100 bases:
>100_bases TTATCATAGTTATTAATGTAATATTAATACTTTTTATAAAAATATAATTATTTCAATTAATATTTTCGGATTGGAAACTT AATAGAAAGGATGTATTGTT
Downstream 100 bases:
>100_bases TTGTGCACATTATAAACGAAATGTTACTAATATATAAATAAATAGTAAATGTTTGGGAATTTATATTGAAGTAATTTAAA TGTAAATTATACTTATATAT
Product: putative lipoprotein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 204; Mature: 203
Protein sequence:
>204_residues MPKALIGTAISATAIIIGAIIGGIWSSCINKKTITKNEEIQKHILEENKKIDKVYYKDKFKESGRTVRLDICTAIFEGIR TIKKIKQNKEEYYPVCISINRNYYRDIAVLTKKFTLREISYINQLYGIIDKINYDVKKIDYSNKNSWLNILVDYEILLKK VYGNNYKKILEVDIEECNYDNLIDNNIIKEGYRDVLIKLNNIIE
Sequences:
>Translated_204_residues MPKALIGTAISATAIIIGAIIGGIWSSCINKKTITKNEEIQKHILEENKKIDKVYYKDKFKESGRTVRLDICTAIFEGIR TIKKIKQNKEEYYPVCISINRNYYRDIAVLTKKFTLREISYINQLYGIIDKINYDVKKIDYSNKNSWLNILVDYEILLKK VYGNNYKKILEVDIEECNYDNLIDNNIIKEGYRDVLIKLNNIIE >Mature_203_residues PKALIGTAISATAIIIGAIIGGIWSSCINKKTITKNEEIQKHILEENKKIDKVYYKDKFKESGRTVRLDICTAIFEGIRT IKKIKQNKEEYYPVCISINRNYYRDIAVLTKKFTLREISYINQLYGIIDKINYDVKKIDYSNKNSWLNILVDYEILLKKV YGNNYKKILEVDIEECNYDNLIDNNIIKEGYRDVLIKLNNIIE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23860; Mature: 23729
Theoretical pI: Translated: 9.28; Mature: 9.28
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKALIGTAISATAIIIGAIIGGIWSSCINKKTITKNEEIQKHILEENKKIDKVYYKDKF CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH KESGRTVRLDICTAIFEGIRTIKKIKQNKEEYYPVCISINRNYYRDIAVLTKKFTLREIS HHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH YINQLYGIIDKINYDVKKIDYSNKNSWLNILVDYEILLKKVYGNNYKKILEVDIEECNYD HHHHHHHHHHHHCCCHHEECCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHEEEHHHCCCC NLIDNNIIKEGYRDVLIKLNNIIE CCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PKALIGTAISATAIIIGAIIGGIWSSCINKKTITKNEEIQKHILEENKKIDKVYYKDKF CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH KESGRTVRLDICTAIFEGIRTIKKIKQNKEEYYPVCISINRNYYRDIAVLTKKFTLREIS HHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHH YINQLYGIIDKINYDVKKIDYSNKNSWLNILVDYEILLKKVYGNNYKKILEVDIEECNYD HHHHHHHHHHHHCCCHHEECCCCCCCEEEEEEHHHHHHHHHHCCCCHHHHEEEHHHCCCC NLIDNNIIKEGYRDVLIKLNNIIE CCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA