| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is yraM [H]
Identifier: 170751370
GI number: 170751370
Start: 5308664
End: 5309824
Strand: Direct
Name: yraM [H]
Synonym: Mrad2831_4989
Alternate gene names: 170751370
Gene position: 5308664-5309824 (Clockwise)
Preceding gene: 170751369
Following gene: 170751371
Centisome position: 87.34
GC content: 75.62
Gene sequence:
>1161_bases GTGAGCGCGGCTCCGCGTTCCGGCACGCTGCCGGCCGTGTTCATGCGCGGCGGCACCAGCAAGGCGCTGATGCTGCACCG CCGGGACGTGCCGGGGGATCTCGCCGCCTGGGAGCCGGTCTTCCTCTCCGCCATGGACAGCCCCGACCCGTTCGGGCGGC AGCTCAACGGCATGGGCGGGGGCGTCTCGTCGGTCTCGAAGATCTGCGTGGTGGAGCGCTCCGCGCGGCCGGACGCCGAC ATCGACTACACCTTCGTGCAGGTCGTGGTCCGGGACGGCCGCATCGACCTGTCGGGCAATTGCGGCAACATGCTCGCCGC CGTGGGACCGTTCGCGGTCAACGAGGGGCTCGTCGAGGTCCCGGACGGCCCGGTGCGGCTGCGGATCTTCAACACCAACA CGCGCAAGCGGATCGCGGCGACCTTCGCGGTGGAGGGCGGCCGCAGCGTCTACCGCGGCGACCTCGCGATCCCCGGCGTC GCTGGCACCGGCGCGCCGATCCAGCTCGACTTCCTGGATCCGGGCGGCGCCACGACCGGCCGGCTGCTCCCGACCGGCAC CGTCCGCCAGAGGCTCGACGTGCCGGGCCTCGGCGCGATCGAGGCCTCCCTGATCGACGCCGCCAACGCCTGCGTGTTCG TCCGCGCCGCCGATCTCGGGCTGGCCGGCACCGAGCTGCCCGCAGCCCTGGAGGCCGTGCCGGGCCTCCTCGACCGGCTG GCGCGGATCCGCCGGGCCGGCTCCGTGGCGATGGGCATCGCGCCGGACGTCGAGGCGGCGGCGCGCGTCGTCCACGTGCC CTTCGTCGGCCTCGTCGCCCCGCCGCAGGAGTCCGGCAGCCTCTCCGGCGACGCGATCCGCGCCGCCGAGATCGACCTGA CCGCCCGGGTCGTCTCCAACGGCGTGCCGCATCAGGCGCTGCCGCTGACCGCCACCCTGTGCCTCGCGGTCGCCGCCCGG CTCGAAGGCAGTCTCGTCCACGAGGCCGCCCGCCCCACCGGCGCGGCCCTGCGGGTCGGCATGCCGTCGGGCATCCTCAC CGCCGACGCCGCCGTGACCCGCGGGGCCGACGGCTGGCGGGCCGAGCGCGGCGCCTTCTTCCGCACGGCGCGCCCGCTGA TGCGTGGCGCGGTGTTCTACGACGCGCCGCCGCCCGTCTGA
Upstream 100 bases:
>100_bases TGTTCGTCGGCCGCCTGCGCAAGAAGCTCGCGGTGGACCTGATCCAGACCGTGCGCGGCCTCGGCTACCTCGTGGATCCC AACCAGCCGCCGGCGCGGAT
Downstream 100 bases:
>100_bases GCGACCGACGCAACCATGATCGACCTCATCGGCCTCTTCTCCCTGCGCCGCCGCTCCATCGCGGTGCGGCTCGCCGTGTC GGCGTTCCTGTCGAGCTCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 386; Mature: 385
Protein sequence:
>386_residues MSAAPRSGTLPAVFMRGGTSKALMLHRRDVPGDLAAWEPVFLSAMDSPDPFGRQLNGMGGGVSSVSKICVVERSARPDAD IDYTFVQVVVRDGRIDLSGNCGNMLAAVGPFAVNEGLVEVPDGPVRLRIFNTNTRKRIAATFAVEGGRSVYRGDLAIPGV AGTGAPIQLDFLDPGGATTGRLLPTGTVRQRLDVPGLGAIEASLIDAANACVFVRAADLGLAGTELPAALEAVPGLLDRL ARIRRAGSVAMGIAPDVEAAARVVHVPFVGLVAPPQESGSLSGDAIRAAEIDLTARVVSNGVPHQALPLTATLCLAVAAR LEGSLVHEAARPTGAALRVGMPSGILTADAAVTRGADGWRAERGAFFRTARPLMRGAVFYDAPPPV
Sequences:
>Translated_386_residues MSAAPRSGTLPAVFMRGGTSKALMLHRRDVPGDLAAWEPVFLSAMDSPDPFGRQLNGMGGGVSSVSKICVVERSARPDAD IDYTFVQVVVRDGRIDLSGNCGNMLAAVGPFAVNEGLVEVPDGPVRLRIFNTNTRKRIAATFAVEGGRSVYRGDLAIPGV AGTGAPIQLDFLDPGGATTGRLLPTGTVRQRLDVPGLGAIEASLIDAANACVFVRAADLGLAGTELPAALEAVPGLLDRL ARIRRAGSVAMGIAPDVEAAARVVHVPFVGLVAPPQESGSLSGDAIRAAEIDLTARVVSNGVPHQALPLTATLCLAVAAR LEGSLVHEAARPTGAALRVGMPSGILTADAAVTRGADGWRAERGAFFRTARPLMRGAVFYDAPPPV >Mature_385_residues SAAPRSGTLPAVFMRGGTSKALMLHRRDVPGDLAAWEPVFLSAMDSPDPFGRQLNGMGGGVSSVSKICVVERSARPDADI DYTFVQVVVRDGRIDLSGNCGNMLAAVGPFAVNEGLVEVPDGPVRLRIFNTNTRKRIAATFAVEGGRSVYRGDLAIPGVA GTGAPIQLDFLDPGGATTGRLLPTGTVRQRLDVPGLGAIEASLIDAANACVFVRAADLGLAGTELPAALEAVPGLLDRLA RIRRAGSVAMGIAPDVEAAARVVHVPFVGLVAPPQESGSLSGDAIRAAEIDLTARVVSNGVPHQALPLTATLCLAVAARL EGSLVHEAARPTGAALRVGMPSGILTADAAVTRGADGWRAERGAFFRTARPLMRGAVFYDAPPPV
Specific function: Unknown
COG id: COG2828
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli ybhH [H]
Homologues:
Organism=Escherichia coli, GI1786985, Length=371, Percent_Identity=32.0754716981132, Blast_Score=178, Evalue=4e-46,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007400 [H]
Pfam domain/function: PF04303 PrpF [H]
EC number: NA
Molecular weight: Translated: 39826; Mature: 39695
Theoretical pI: Translated: 7.97; Mature: 7.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPRSGTLPAVFMRGGTSKALMLHRRDVPGDLAAWEPVFLSAMDSPDPFGRQLNGMGG CCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCC GVSSVSKICVVERSARPDADIDYTFVQVVVRDGRIDLSGNCGNMLAAVGPFAVNEGLVEV CHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCHHHHHCCHHHCCCEEEC PDGPVRLRIFNTNTRKRIAATFAVEGGRSVYRGDLAIPGVAGTGAPIQLDFLDPGGATTG CCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCEECCCCCCCCCEEEEEEECCCCCCCC RLLPTGTVRQRLDVPGLGAIEASLIDAANACVFVRAADLGLAGTELPAALEAVPGLLDRL CCCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH ARIRRAGSVAMGIAPDVEAAARVVHVPFVGLVAPPQESGSLSGDAIRAAEIDLTARVVSN HHHHHCCCEEECCCCCHHHHHEEEEECEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHC GVPHQALPLTATLCLAVAARLEGSLVHEAARPTGAALRVGMPSGILTADAAVTRGADGWR CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEECCCCCCEECCHHHHCCCCCCC AERGAFFRTARPLMRGAVFYDAPPPV CCCCCHHHHHHHHHHCEEEECCCCCC >Mature Secondary Structure SAAPRSGTLPAVFMRGGTSKALMLHRRDVPGDLAAWEPVFLSAMDSPDPFGRQLNGMGG CCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCHHHHHHCCCCC GVSSVSKICVVERSARPDADIDYTFVQVVVRDGRIDLSGNCGNMLAAVGPFAVNEGLVEV CHHHHHHEEEEECCCCCCCCCCCEEEEEEEECCEEEECCCCCCHHHHHCCHHHCCCEEEC PDGPVRLRIFNTNTRKRIAATFAVEGGRSVYRGDLAIPGVAGTGAPIQLDFLDPGGATTG CCCCEEEEEECCCCCCEEEEEEEECCCCEEEECCEECCCCCCCCCEEEEEEECCCCCCCC RLLPTGTVRQRLDVPGLGAIEASLIDAANACVFVRAADLGLAGTELPAALEAVPGLLDRL CCCCCHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHH ARIRRAGSVAMGIAPDVEAAARVVHVPFVGLVAPPQESGSLSGDAIRAAEIDLTARVVSN HHHHHCCCEEECCCCCHHHHHEEEEECEEEEECCCCCCCCCCCCEEEEEEHHHHHHHHHC GVPHQALPLTATLCLAVAARLEGSLVHEAARPTGAALRVGMPSGILTADAAVTRGADGWR CCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEECCCCCCEECCHHHHCCCCCCC AERGAFFRTARPLMRGAVFYDAPPPV CCCCCHHHHHHHHHHCEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9141695; 9308178; 9384377 [H]