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The map label for this gene is cydA [H]

Identifier: 170751310

GI number: 170751310

Start: 5247924

End: 5249342

Strand: Direct

Name: cydA [H]

Synonym: Mrad2831_4927

Alternate gene names: 170751310

Gene position: 5247924-5249342 (Clockwise)

Preceding gene: 170751308

Following gene: 170751311

Centisome position: 86.35

GC content: 70.33

Gene sequence:

>1419_bases
GTGCTCGCCAACCTCGATCCCCTGATCCTCGCCCGCATGCAGTTCGGGTTCACGGTGGCCTTCCACATCGTGTTCCCGGC
CTTCTCGATCGGCCTCGCGAGCTTCCTCGCCGTGCTGGAGGGGCTCTGGCTCGCCACCGGCCGCCAGGTCTTCATGGACC
TGTTCAAGTACTGGATAAAGATCTTCGCGATCGCCTTCGCGATGGGCGTCGTGTCCGGGCTGGTGATGTCCTACCAGTTC
GGCACGAACTGGTCGGTCTTCTCCGACAAGACCGGCCCTGTCCTGGGCCCGATGATGGCCTACGAGGTGCTGTCGGCCTT
CTTCCTGGAGGCCGGCTTCCTCGGCGTGATGCTGTTCGGCATGACGAAGGTCGGGCCGCGGCTGCACTTCGCGGCGACGC
TGATGGTGGCGTTCGGGACCTTCTTCTCGGCGTTCTGGATCCTGGCGGTGAACTCGTGGATGCAGACGCCGGCGGGCTAC
GGCACCAACGCCGAGGGCCAGTTCGTGCCGCTGGACTGGTGGGCGATCGTGTTCAACCCGTCCTTCCCGTACCGCCTCGT
GCACATGGTGCTCGCCGCCTACCTCACCACCGCGCTGGTGGTGGGCGCGGTCGGCGCGTGGCACCTGCTGCGCGACCGGG
CCAACCCGGCCGCCCGGACGATGTTCTCGATGGCGATGTGGATGGCCGCCCTGGTCGCGCCGGTCCAGATCCTCGCGGGC
GACGCGCACGGCCTCAACACCCTGGAGCACCAGCCCGCCAAGGTCATGGCCATGGAGGGCCATTTCCGGAGCCACCCGGA
CGGCGCGCCGCTGGTGCTGTTCGGCTTGCCCGACCAGGAGGCCGGCACGGTGCGCTACGCGGTCGAGATCCCGAAGCTGT
CCTCGCTGGTGCTGAAGCACGCCCTCGACGCGCCCCTGAAGGGGCTCGACAGCCTGCCGCGGGCGGAGTGGCCGCCGGTG
CCGATCGTGTTCTGGTCGTTCCGCGTCATGGTCGGCCTCGGGATGCTGATGCTGCTCCTGGGCGCCCTGAGCCTCCTCGC
CCGCTGGCGCGGCACCCTCTACGCGTGGCGCCCGCTGCACCGCTTCGCGGTGGCCATGGGCCCGGCGGGGTTCGTGGCGG
TGCTGGCCGGCTGGATCACCACCGAGGTCGGGCGCCAGCCCTACACGGTCTACGGCCTGCTGCGCACCGCGCAGTCGGCC
TCGCCGCTGCACGCGCCGGCGGTGGCGGCCTCGCTCACCGCCTTCGTGGTGATCTACTTCGCGGTCTTCGCCATGGGCAC
CGGCTACATCCTGCGCCTGATGGGCCAGCCCCCGCACGCCGGCGAGAGCGGGATCGAGCCCGGCGCGCCGATCCGGACGG
CGGGCATCACGCCCGCCCCGGCGATCGATCCCGACCGTCACCTCCAGCCGGCCGAGTGA

Upstream 100 bases:

>100_bases
GCGCGCGGCCCGACGCCGCGCGGGCTCCCGTGTGTTCCGACTTTTCAGATATTTCTGAAATTGCTATAGAACGAGTCGCG
CCCAGAGCCGGAGGCCCGAC

Downstream 100 bases:

>100_bases
GGGACCCATGGCCTACAGCTTCGACCTCACGGTGGTCTGGGCGCTCGTGATCGCCTTCGCGGTCTTCGCCTACATCGTCA
TGGACGGGTTCGATCTCGGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MLANLDPLILARMQFGFTVAFHIVFPAFSIGLASFLAVLEGLWLATGRQVFMDLFKYWIKIFAIAFAMGVVSGLVMSYQF
GTNWSVFSDKTGPVLGPMMAYEVLSAFFLEAGFLGVMLFGMTKVGPRLHFAATLMVAFGTFFSAFWILAVNSWMQTPAGY
GTNAEGQFVPLDWWAIVFNPSFPYRLVHMVLAAYLTTALVVGAVGAWHLLRDRANPAARTMFSMAMWMAALVAPVQILAG
DAHGLNTLEHQPAKVMAMEGHFRSHPDGAPLVLFGLPDQEAGTVRYAVEIPKLSSLVLKHALDAPLKGLDSLPRAEWPPV
PIVFWSFRVMVGLGMLMLLLGALSLLARWRGTLYAWRPLHRFAVAMGPAGFVAVLAGWITTEVGRQPYTVYGLLRTAQSA
SPLHAPAVAASLTAFVVIYFAVFAMGTGYILRLMGQPPHAGESGIEPGAPIRTAGITPAPAIDPDRHLQPAE

Sequences:

>Translated_472_residues
MLANLDPLILARMQFGFTVAFHIVFPAFSIGLASFLAVLEGLWLATGRQVFMDLFKYWIKIFAIAFAMGVVSGLVMSYQF
GTNWSVFSDKTGPVLGPMMAYEVLSAFFLEAGFLGVMLFGMTKVGPRLHFAATLMVAFGTFFSAFWILAVNSWMQTPAGY
GTNAEGQFVPLDWWAIVFNPSFPYRLVHMVLAAYLTTALVVGAVGAWHLLRDRANPAARTMFSMAMWMAALVAPVQILAG
DAHGLNTLEHQPAKVMAMEGHFRSHPDGAPLVLFGLPDQEAGTVRYAVEIPKLSSLVLKHALDAPLKGLDSLPRAEWPPV
PIVFWSFRVMVGLGMLMLLLGALSLLARWRGTLYAWRPLHRFAVAMGPAGFVAVLAGWITTEVGRQPYTVYGLLRTAQSA
SPLHAPAVAASLTAFVVIYFAVFAMGTGYILRLMGQPPHAGESGIEPGAPIRTAGITPAPAIDPDRHLQPAE
>Mature_472_residues
MLANLDPLILARMQFGFTVAFHIVFPAFSIGLASFLAVLEGLWLATGRQVFMDLFKYWIKIFAIAFAMGVVSGLVMSYQF
GTNWSVFSDKTGPVLGPMMAYEVLSAFFLEAGFLGVMLFGMTKVGPRLHFAATLMVAFGTFFSAFWILAVNSWMQTPAGY
GTNAEGQFVPLDWWAIVFNPSFPYRLVHMVLAAYLTTALVVGAVGAWHLLRDRANPAARTMFSMAMWMAALVAPVQILAG
DAHGLNTLEHQPAKVMAMEGHFRSHPDGAPLVLFGLPDQEAGTVRYAVEIPKLSSLVLKHALDAPLKGLDSLPRAEWPPV
PIVFWSFRVMVGLGMLMLLLGALSLLARWRGTLYAWRPLHRFAVAMGPAGFVAVLAGWITTEVGRQPYTVYGLLRTAQSA
SPLHAPAVAASLTAFVVIYFAVFAMGTGYILRLMGQPPHAGESGIEPGAPIRTAGITPAPAIDPDRHLQPAE

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=516, Percent_Identity=31.0077519379845, Blast_Score=233, Evalue=2e-62,
Organism=Escherichia coli, GI87081779, Length=311, Percent_Identity=36.6559485530547, Blast_Score=218, Evalue=9e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51272; Mature: 51272

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure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HHHHHCHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]