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The map label for this gene is cydB [H]

Identifier: 170751311

GI number: 170751311

Start: 5249350

End: 5250357

Strand: Direct

Name: cydB [H]

Synonym: Mrad2831_4928

Alternate gene names: 170751311

Gene position: 5249350-5250357 (Clockwise)

Preceding gene: 170751310

Following gene: 170751312

Centisome position: 86.37

GC content: 72.02

Gene sequence:

>1008_bases
ATGGCCTACAGCTTCGACCTCACGGTGGTCTGGGCGCTCGTGATCGCCTTCGCGGTCTTCGCCTACATCGTCATGGACGG
GTTCGATCTCGGCATCGGCCTGCTGTTCCCGGTCCTGCGGCCGGGCGAGGAACGGGACACCGCCATGAACTCGGTCGCCC
CGGTCTGGGACGGCAACGAGACCTGGCTGGTGCTGGGCGGCGGCGGCCTGTTCGCCGTCTTCCCCCTGGCCTACGCGGTG
ATCCTGCCGGCGCTCTACGCGCCGATCATCGCGATGCTCCTCGGCCTGATCTTCCGCGGCGTCGCGTTCGAGTTCCGCTG
GCGCGATCCCCGCCACCGCGCCGCCTGGGACGTGGCCTTCGCGGGCGGCTCGCTGGTGGCGGCCCTCGCCCAGGGCATCG
CGCTGGGCGCGTTGCTGCAGGGCATCGCGGTCGAGGGGCGGGCCTATGCCGGCGGCTGGTGGGACTGGCTCACGCCCTTC
AGCCTCCTCGTCGGCGCGAGCCTCGTCGTCGCCTACGCGCTGCTCGGGGCGACGTGGCTGGTGATGCGCACCGAGGGCCT
GCTCCAGGCGCGGGCCCGGCGCCTCGCCCTGCGCCTCACCGCGGCGACGGTCGCGGCCATCGCGCTCGTCAGCGCGGTGA
CGCCGTTCCTCCAGGGCCGCTACTACGAGCGCTGGCTGGCGATGCCGAACGTGCTCGTCACCGCGCAGGTGCCGCTGCTC
GTGGCGCTCGCGGCCTTCGCCCTGTGGCGCACCCTGCGGGGCGGCGCCGAGCGGGCGCCCTTCCTGATCGCGCTGGGGCT
GTTCGCCCTGACCTTCGCGGGGCTGGGCATCAGCATCTTCCCCGACGTCGTGCCGGGCCGGATCACGATCTGGCAGGCGG
CCGCCCCCGAGGCGAGCCAGATTTTCCTGCTCGCCGGCGCGTCGGTGTTGATCCCGATCATACTGTCCTACACCGCGTAC
GCGTACTGGGTCTTCCGCGGCAAAGTCGACGCGCACGGATATCACTGA

Upstream 100 bases:

>100_bases
AGCGGGATCGAGCCCGGCGCGCCGATCCGGACGGCGGGCATCACGCCCGCCCCGGCGATCGATCCCGACCGTCACCTCCA
GCCGGCCGAGTGAGGGACCC

Downstream 100 bases:

>100_bases
TGGCACCCGCAGCAGCACAGCCCCTCTGGAAACGCCTCGCGTGGTTCGCGGGGCTCTGGGCCTCGAGCATCGTCGGCCTC
GGCTTCGTCGCGACGGTCCT

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MAYSFDLTVVWALVIAFAVFAYIVMDGFDLGIGLLFPVLRPGEERDTAMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAV
ILPALYAPIIAMLLGLIFRGVAFEFRWRDPRHRAAWDVAFAGGSLVAALAQGIALGALLQGIAVEGRAYAGGWWDWLTPF
SLLVGASLVVAYALLGATWLVMRTEGLLQARARRLALRLTAATVAAIALVSAVTPFLQGRYYERWLAMPNVLVTAQVPLL
VALAAFALWRTLRGGAERAPFLIALGLFALTFAGLGISIFPDVVPGRITIWQAAAPEASQIFLLAGASVLIPIILSYTAY
AYWVFRGKVDAHGYH

Sequences:

>Translated_335_residues
MAYSFDLTVVWALVIAFAVFAYIVMDGFDLGIGLLFPVLRPGEERDTAMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAV
ILPALYAPIIAMLLGLIFRGVAFEFRWRDPRHRAAWDVAFAGGSLVAALAQGIALGALLQGIAVEGRAYAGGWWDWLTPF
SLLVGASLVVAYALLGATWLVMRTEGLLQARARRLALRLTAATVAAIALVSAVTPFLQGRYYERWLAMPNVLVTAQVPLL
VALAAFALWRTLRGGAERAPFLIALGLFALTFAGLGISIFPDVVPGRITIWQAAAPEASQIFLLAGASVLIPIILSYTAY
AYWVFRGKVDAHGYH
>Mature_334_residues
AYSFDLTVVWALVIAFAVFAYIVMDGFDLGIGLLFPVLRPGEERDTAMNSVAPVWDGNETWLVLGGGGLFAVFPLAYAVI
LPALYAPIIAMLLGLIFRGVAFEFRWRDPRHRAAWDVAFAGGSLVAALAQGIALGALLQGIAVEGRAYAGGWWDWLTPFS
LLVGASLVVAYALLGATWLVMRTEGLLQARARRLALRLTAATVAAIALVSAVTPFLQGRYYERWLAMPNVLVTAQVPLLV
ALAAFALWRTLRGGAERAPFLIALGLFALTFAGLGISIFPDVVPGRITIWQAAAPEASQIFLLAGASVLIPIILSYTAYA
YWVFRGKVDAHGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=370, Percent_Identity=32.4324324324324, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1787213, Length=370, Percent_Identity=29.7297297297297, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36084; Mature: 35953

Theoretical pI: Translated: 9.15; Mature: 9.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSFDLTVVWALVIAFAVFAYIVMDGFDLGIGLLFPVLRPGEERDTAMNSVAPVWDGNE
CCEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TWLVLGGGGLFAVFPLAYAVILPALYAPIIAMLLGLIFRGVAFEFRWRDPRHRAAWDVAF
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHEEEEE
AGGSLVAALAQGIALGALLQGIAVEGRAYAGGWWDWLTPFSLLVGASLVVAYALLGATWL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMRTEGLLQARARRLALRLTAATVAAIALVSAVTPFLQGRYYERWLAMPNVLVTAQVPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHHH
VALAAFALWRTLRGGAERAPFLIALGLFALTFAGLGISIFPDVVPGRITIWQAAAPEASQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCCCCE
IFLLAGASVLIPIILSYTAYAYWVFRGKVDAHGYH
EEEEECHHHHHHHHHHHHHHHHEEEECCCCCCCCC
>Mature Secondary Structure 
AYSFDLTVVWALVIAFAVFAYIVMDGFDLGIGLLFPVLRPGEERDTAMNSVAPVWDGNE
CEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCC
TWLVLGGGGLFAVFPLAYAVILPALYAPIIAMLLGLIFRGVAFEFRWRDPRHRAAWDVAF
EEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCHHHEEEEE
AGGSLVAALAQGIALGALLQGIAVEGRAYAGGWWDWLTPFSLLVGASLVVAYALLGATWL
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMRTEGLLQARARRLALRLTAATVAAIALVSAVTPFLQGRYYERWLAMPNVLVTAQVPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCEEEEHHHHHH
VALAAFALWRTLRGGAERAPFLIALGLFALTFAGLGISIFPDVVPGRITIWQAAAPEASQ
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCEEEEEECCCCCCCE
IFLLAGASVLIPIILSYTAYAYWVFRGKVDAHGYH
EEEEECHHHHHHHHHHHHHHHHEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]