Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 170750128

GI number: 170750128

Start: 3971745

End: 3972518

Strand: Reverse

Name: rimP

Synonym: Mrad2831_3730

Alternate gene names: 170750128

Gene position: 3972518-3971745 (Counterclockwise)

Preceding gene: 170750129

Following gene: 170750127

Centisome position: 65.36

GC content: 72.35

Gene sequence:

>774_bases
ATGTCGTCCGAGATTGAAGCGGATCTGTCCGAGAAGCGCCTCGTCCGCGAGGCCGGGGTCGCCGCGCGCGTCGCGCAGGC
GATCGAGGGGCCGCTCGCGGGCCTCGGCTTCCGGCTGGTCCGGGTCAGGATGTCCAACGTCAACGGCTGCACCGTGCAGA
TCATGGCGGAGCGGCCGGACGGCACCTTCACGATCGACGATTGCGAGGCGGTGAGCCGCGCGATCTCGCCGATCCTCGAC
GTCGACGATCCGGTGGGCGGCGCCTACAACCTCGAAGTGTCCTCGCCCGGCATCGACCGGCCGCTGGTCCGGGTCTCGGA
CTTCGCCCGCTGGGCGGGCTACGAGGCGAAGGTCGAGCTGAGCCCGCCGCTGGACGGGCGCAAGCGGTTCCGCGGCATCC
TGGGCGCACCCGATCCGACGGGGACGACCGTCCCGATCGACCTGCCCGACGTGAAGGAAGGGCTGCCGAGCCGCATCGAC
CTGCCGCTGAAGGACCTCGCCGAGGCCCATCTCGTCCTCACCGACGAGCTGATCCGCGAATCGCTCCGCCGCGGCGGGCC
GCCCGCCGCGGACGAGGCCGATGAGGCCGAAGAGGCCGAGGACGAAGAGGTCGCCGCGGAGAGCGCGTCGTCGCCGGCGC
GGGCGCCGTTCCAGCCGAAGGGGCCCCGGAAGGCCAGCCCCGCGGCCAAGCCCCAGAAACAGGCCCGGACCGGCCCCAAG
AAGCCGGTCGTGACCAAGGCGTCCCGGCTCAAGGACCGCGACTCCCTGCACTGA

Upstream 100 bases:

>100_bases
GGGTCCGCTCTTTTTTTTCGCCGCACACCCTCTCGCCGCACGAGGCCCCACGCCGCGGGCGGCCAGGCAGGACGCCGCGA
AGGTTGCGCGCTGAACATCC

Downstream 100 bases:

>100_bases
GACCCCCGCGTCGGCTGCCCGGCGGCCGGCCCGAAGATTTGACGGAAGAGAAGGACCGACACCGATGGCCGTCGTCAGCG
CCAACAGGCTCGAACTCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISPILD
VDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRID
LPLKDLAEAHLVLTDELIRESLRRGGPPAADEADEAEEAEDEEVAAESASSPARAPFQPKGPRKASPAAKPQKQARTGPK
KPVVTKASRLKDRDSLH

Sequences:

>Translated_257_residues
MSSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISPILD
VDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRID
LPLKDLAEAHLVLTDELIRESLRRGGPPAADEADEAEEAEDEEVAAESASSPARAPFQPKGPRKASPAAKPQKQARTGPK
KPVVTKASRLKDRDSLH
>Mature_256_residues
SSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPDGTFTIDDCEAVSRAISPILDV
DDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVELSPPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRIDL
PLKDLAEAHLVLTDELIRESLRRGGPPAADEADEAEEAEDEEVAAESASSPARAPFQPKGPRKASPAAKPQKQARTGPKK
PVVTKASRLKDRDSLH

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=128, Percent_Identity=37.5, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_METRJ (B1LX00)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001756388.1
- ProteinModelPortal:   B1LX00
- SMR:   B1LX00
- GeneID:   6139783
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_3730
- HOGENOM:   HBG668072
- OMA:   CTVQIMA
- ProtClustDB:   CLSK2331303
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 27523; Mature: 27392

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPD
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCC
GTFTIDDCEAVSRAISPILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVEL
CCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEE
SPPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLVLTDELIRE
CCCCCHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
SLRRGGPPAADEADEAEEAEDEEVAAESASSPARAPFQPKGPRKASPAAKPQKQARTGPK
HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
KPVVTKASRLKDRDSLH
CCCHHHHHHHCCCCCCC
>Mature Secondary Structure 
SSEIEADLSEKRLVREAGVAARVAQAIEGPLAGLGFRLVRVRMSNVNGCTVQIMAERPD
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEEEEEECCC
GTFTIDDCEAVSRAISPILDVDDPVGGAYNLEVSSPGIDRPLVRVSDFARWAGYEAKVEL
CCEEEHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEE
SPPLDGRKRFRGILGAPDPTGTTVPIDLPDVKEGLPSRIDLPLKDLAEAHLVLTDELIRE
CCCCCHHHHHHHCCCCCCCCCCEEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
SLRRGGPPAADEADEAEEAEDEEVAAESASSPARAPFQPKGPRKASPAAKPQKQARTGPK
HHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
KPVVTKASRLKDRDSLH
CCCHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA