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The map label for this gene is ycbR [H]

Identifier: 170682796

GI number: 170682796

Start: 2188257

End: 2188931

Strand: Reverse

Name: ycbR [H]

Synonym: EcSMS35_2180

Alternate gene names: 170682796

Gene position: 2188931-2188257 (Counterclockwise)

Preceding gene: 170679821

Following gene: 170682116

Centisome position: 43.19

GC content: 46.67

Gene sequence:

>675_bases
GTGACCGTAAGTTTAACGGCAATATTACTCAGCTGTTCGTTCACATGGGCGGCAGGTAAAGGTGGGGTCGGACTTGCAGC
AACACGTCTTGTTTATTCGGAAGGTGAAGAGCAAATTTCACTGGGTGTACGTAACACCAGTCCGGATGTTCCTTATCTGA
TTCAGTCATGGGTGATGACACCAGATAATAAAAAGTCAGCGGACTTTATTATTACACCACCGCTATTTGTGCTGAATCCG
GCAAACGAGAACCTGCTACGCATTATGTACATTGGCGCGCCGTTGGCGAAAGACAGAGAAACTCTTTTCTTCACCAGCGT
ACGGGCAGTCCCTTCAACAACGAAGCGGGAAGAAGGCAATACCCTGAAGATTGCCACACAAAGCGTCATCAAACTTTTCT
GGCGACCAAAAGGTTTAGCGTATCCCTTAGCCGAGGCTCCGGCGAAACTACGTTGCACTTCGTCAGCTGACATGGTTACG
GTCAGTAACCCAACACCTTATTTCATTACCCTGACAGACCTGAAAATAGGTGGAAAAGTAGTTAAAAATCAAATGATTTC
CCCCTTTGATAAATACCAATTCTCTCTGCCAATGGGTGCCAAAAACAGCAGCGTAACGTACCGAACTATCAATGACTACG
GGGCGGAAACGCCGCAACTCAACTGTAAATCGTAA

Upstream 100 bases:

>100_bases
CATTAATTTTTAATTAATTAATACCCTTCCAGTGTCCTGGAGGGGATATTCATTTTTTTAAGAGTGACTATTTATGAAAA
CTTGCATAACAAAGGGAATT

Downstream 100 bases:

>100_bases
TTCGTCTTCATTTAAGAGAGCGAGATGTATAGAACTCAACGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTT
TATTGGTGGGCTGGTGGTGT

Product: periplasmic pilus chaperone family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNP
ANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVT
VSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS

Sequences:

>Translated_224_residues
MTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNP
ANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVT
VSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
>Mature_223_residues
TVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPA
NENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGNTLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVTV
SNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS

Specific function: Could be required for the biogenesis of the putative ycbQ fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1787171, Length=224, Percent_Identity=96.875, Blast_Score=447, Evalue=1e-127,
Organism=Escherichia coli, GI1790771, Length=219, Percent_Identity=43.8356164383562, Blast_Score=173, Evalue=7e-45,
Organism=Escherichia coli, GI1786743, Length=204, Percent_Identity=40.1960784313725, Blast_Score=163, Evalue=9e-42,
Organism=Escherichia coli, GI1789532, Length=216, Percent_Identity=35.1851851851852, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1788677, Length=203, Percent_Identity=35.4679802955665, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI87082203, Length=235, Percent_Identity=31.9148936170213, Blast_Score=100, Evalue=8e-23,
Organism=Escherichia coli, GI87081806, Length=205, Percent_Identity=34.6341463414634, Blast_Score=97, Evalue=7e-22,
Organism=Escherichia coli, GI1786936, Length=206, Percent_Identity=32.5242718446602, Blast_Score=95, Evalue=3e-21,
Organism=Escherichia coli, GI1786333, Length=211, Percent_Identity=29.8578199052133, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1788428, Length=206, Percent_Identity=26.2135922330097, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 24539; Mature: 24407

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMT
CEEEEEEEEEEECEEEECCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCC
PDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGN
CCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCC
TLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKV
EEEEEHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCEEEECCCCCEEEEEEEEECCCHH
VKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
HHHHHCCCCHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC
>Mature Secondary Structure 
TVSLTAILLSCSFTWAAGKGGVGLAATRLVYSEGEEQISLGVRNTSPDVPYLIQSWVMT
EEEEEEEEEEECEEEECCCCCCCHHEEEEEECCCCCEEEEEECCCCCCCCHHHHHHCCC
PDNKKSADFIITPPLFVLNPANENLLRIMYIGAPLAKDRETLFFTSVRAVPSTTKREEGN
CCCCCCCCEEECCCEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCC
TLKIATQSVIKLFWRPKGLAYPLAEAPAKLRCTSSADMVTVSNPTPYFITLTDLKIGGKV
EEEEEHHHHHHHHCCCCCCCCCHHCCCCEEEECCCCCEEEECCCCCEEEEEEEEECCCHH
VKNQMISPFDKYQFSLPMGAKNSSVTYRTINDYGAETPQLNCKS
HHHHHCCCCHHEEEECCCCCCCCCEEEEEEHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]