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The map label for this gene is ycbS [H]

Identifier: 170682116

GI number: 170682116

Start: 2185632

End: 2188232

Strand: Reverse

Name: ycbS [H]

Synonym: EcSMS35_2179

Alternate gene names: 170682116

Gene position: 2188232-2185632 (Counterclockwise)

Preceding gene: 170682796

Following gene: 170683719

Centisome position: 43.17

GC content: 47.6

Gene sequence:

>2601_bases
ATGTATAGAACTCAACGACAACACAGCCTGTTAAGCTCTGGTGGAGTGCCATCGTTTATTGGTGGGCTGGTGGTGTTTGT
GTCGGCAGCGTTCAATGCACAAGCTGAAACCTGGTTCGATCCAGCCTTTTTCAAAGATGATCCCTCAATGGTGGCTGATT
TGTCTCGTTTCGAAAAAGGGCAAAAAATAACGCCAGGGGTTTATCGAGTCGATATTGTTCTGAATCAGACAATTGTAGAT
ACGCGCAACGTCAATTTTGTTGAGATAACGCCAGAGAAGGGGATTGCCGCCTGTTTGACGACTGAAAGCCTGGATGCAAT
GGGCGTGAATACTGATGCGTTTCCGGCTTTTAAACAACTGGATAAACAAGCGTGTGCGCCATTGGCGGAAATTATTCCGG
ATGCCAGCGTAACTTTTAATGTGAATAAACTCCGTCTGGAAATTTCAGTACCGCAAATCGCCATCAAAAGTAACGCTCGT
GGTTATGTCCCCCCTGAACGTTGGGATGAAGGGATCAACGCGCTATTACTGGGATATTCATTTAGCGGGGCTAACAGTAT
TCATAGCAGCGCAGGTAGTGATTCTGGCGACAGCTATTTTCTGAATTTAAACAGTGGCGTTAATTTAGGCCCATGGAGAT
TGCGCAACAATTCAACATGGAGTCGCAGTAGTGGCCAAACCGCAGAATGGAAGAATCTCAGCAGCTATTTGCAGCGGGCG
GTGATTCCATTAAAAGGCGAACTGACCGTCGGTGATGATTATACGGCAGGCGATTTTTTTGATAGCGTCAGCTTTCGTGG
CGTGCAGCTGGCGTCAGATGACAACATGCTGCCAGACAGCTTGAAAGGGTTTGCGCCAGTGGTGCGTGGTATCGCCAAAA
GCAATGCACAGGTAACGATTAAGCAAAATGGTTACACCATCTATCAAACTTATGTTTCGCCTGGCGCTTTTGAGATTAGT
GATCTCTACTCTACGTCGTCGAGTGGTGATTTGTTGGTTGAAATCAAAGAAGCTGACGGTAGTGTCAATAGTTACAGTGT
GCCCTTTTCCAGCGTGCCATTACTCCAGCGTCAGGGACGCATCAAATATGCGGTGACGCTGGCGAAATACAGAACCAATA
GTAATGACCAGCAAGAAAGTAAATTTGCTCAGGCCACGCTGCAATGGGGTGGGCCGAGGGGAACGACCTGGTATGGCGGA
GGGCAATATGCTGAATATTACCGTGCCGCTATGTTTGGTCTGGGTTTTAACCTCGGCGATTTCGGAGCAATTTCGTTCGA
CGCGACCCAGGCTAAAAGTACGCTGGCAGACCAAAGTGAACATAAAGGGCAGTCATATCGTTTTCTGTATGCCAAAACGC
TCAACCAATTGGGCACCAACTTTCAATTGATGGGCTACCGCTATTCGACGTCGGGTTTCTACACCCTTTCCGACACTATG
TATAAACACATGGATGGCTACGAATTTAATGACGGTGATGATGAAGATACGCCAATGTGGTCGCGTTATTACAATTTGTT
TTACACAAAACGTGGCAAACTGCAGGTCAACATCTCCCAGCAATTAGGCGAGTACGGTTCGTTTTATTTAAGCGGTAGCC
AGCAAACTTACTGGCATACCGATCAACAGGATCGGCTATTACAGTTTGGCTACAACACGCAAATTAAAGATCTCTCGCTG
GGGGTTTCCTGGAACTACAGTAAGTCCCGTGGTCAACCTGACGCTGACCAGGTGTTTGCACTTAATTTTTCCCTGCCGCT
CAATCTGTTGCTCCCCAAAAGTAATGATAGCTATACCAGGAAAAAAAATTACGCCTGGATGACCTCTAATACCAGTATCG
ATAACGAAGGGCACACTACACAAAACCTGGGTTTAACGGAGACACTACTCGATGACGGTAATCTGAGCTACAGCGTGCAA
CAGGGATATAACAGCGAGGGGAAAACGGCTAATGGTAGCGCCAGCATGGACTACAAAGGGGCGTTTGCAGATGCTCGAGT
GGGCTACAACTACAGCGATAACGGCAGTCAACAACAACTGAACTACGCTCTTTCAGGCAGTTTAGTTGCCCATTCGCAGG
GTATTACGTTGGGTCAATCATTGGGTGAAACTAATGTCCTGATTGCCGCGCCAGGCGCCGAAAATACTCGTGTGGCGAAC
AGCACCGGGCTGAAAACTGACTGGCGTGGATATACCGTTGTGCCTTATGCCACTTCTTATCGGGAAAATCGAATTGCACT
TGATGCGGCGTCGTTAAAACGTAACGTGGATCTTGAAAATGCCGTAGTAAACGTGGTTCCCACCAAAGGGGCATTGGTTC
TGGCGGAGTTCAATGCCCATGCGGGGGCTAGGGTATTAATGAAAACATCAAAGCAGGGTATGCCGCTGAGATTTGGTGCA
ATGGCAACACTGGATGGCGCACAAACAATTAGCGGTATCATTGATGATGATGGTTCGCTCTATATGTCTGGTTTGCCGGC
GAAGGGAACGATAACTGTACGCTGGGGCGACGCTCCCGATCAAATTTGTCATATCAGTTACGAGCTTACCGAACAACAAA
TTAACGCTGCGATTACGCGGATGGATTCAGTATGCGAATAA

Upstream 100 bases:

>100_bases
CAAAAACAGCAGCGTAACGTACCGAACTATCAATGACTACGGGGCGGAAACGCCGCAACTCAACTGTAAATCGTAATTCG
TCTTCATTTAAGAGAGCGAG

Downstream 100 bases:

>100_bases
TTTCAGGGGATAGTAGTGTGTTAAGACTCCGGCTTCTTTTGACTGCTGTTTTAATGCTGTGGGGATTTCATGCCGCCGCT
TATACCGGGCAGTGTCATAC

Product: outer membrane usher protein fimD-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 866; Mature: 866

Protein sequence:

>866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPRGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE

Sequences:

>Translated_866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPRGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE
>Mature_866_residues
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVD
TRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR
GYVPPERWDEGINALLLGYSFSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTIKQNGYTIYQTYVSPGAFEIS
DLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNDQQESKFAQATLQWGGPRGTTWYGG
GQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL
GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQ
QGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGMPLRFGA
MATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPDQICHISYELTEQQINAAITRMDSVCE

Specific function: Could be involved in the export and assembly of the putative ycbQ fimbrial subunit across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=866, Percent_Identity=97.459584295612, Blast_Score=1729, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=857, Percent_Identity=48.7747957992999, Blast_Score=823, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=850, Percent_Identity=45.0588235294118, Blast_Score=753, Evalue=0.0,
Organism=Escherichia coli, GI1789533, Length=872, Percent_Identity=38.9908256880734, Blast_Score=560, Evalue=1e-160,
Organism=Escherichia coli, GI1786332, Length=842, Percent_Identity=32.6603325415677, Blast_Score=387, Evalue=1e-108,
Organism=Escherichia coli, GI1788427, Length=774, Percent_Identity=32.2997416020672, Blast_Score=359, Evalue=1e-100,
Organism=Escherichia coli, GI87081778, Length=857, Percent_Identity=26.7211201866978, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI1789610, Length=814, Percent_Identity=24.8157248157248, Blast_Score=130, Evalue=5e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 95023; Mature: 95023

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHCCCHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNDQQESKFAQATLQWGGPRGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGMPLRFGAMATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPD
CCEEEEEECCCCCCCEEECCEEECCCHHHHHHEECCCCCEEEECCCCCCEEEEEECCCCC
QICHISYELTEQQINAAITRMDSVCE
CEEEEEHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRTQRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFFKDDPSMVADLSRFEKG
CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
QKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTESLDAMGVNTDAFPAFKQL
CCCCCCEEEEEEEEECEEEECCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHH
DKQACAPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNARGYVPPERWDEGINALLLGYS
HHHHCCCHHHHCCCCEEEEEEEEEEEEEECCEEEEECCCCCCCCHHHHHCCCEEEEEEEE
FSGANSIHSSAGSDSGDSYFLNLNSGVNLGPWRLRNNSTWSRSSGQTAEWKNLSSYLQRA
CCCCCCHHHCCCCCCCCEEEEECCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHC
VIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQVTI
CCCCCCEEEECCCCCCCHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEE
KQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGR
EECCEEEEEEECCCCCEEEHHHHCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHCCC
IKYAVTLAKYRTNSNDQQESKFAQATLQWGGPRGTTWYGGGQYAEYYRAAMFGLGFNLGD
EEEEEEEEEECCCCCCHHHHHHHHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
FGAISFDATQAKSTLADQSEHKGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTM
CCEEEECCHHHHHHHHCCHHCCCCCEEEEHHHHHHHHCCCEEEEEEEECCCCEEEEHHHH
YKHMDGYEFNDGDDEDTPMWSRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHT
HHHCCCCCCCCCCCCCCCHHHHHEEEEEEECCCEEEEHHHHCCCCCCEEEECCCCEEEEC
DQQDRLLQFGYNTQIKDLSLGVSWNYSKSRGQPDADQVFALNFSLPLNLLLPKSNDSYTR
CCHHHHEECCCCCCEEEEEEEEEECCHHCCCCCCCCCEEEEEECCCEEEEEECCCCCCCC
KKNYAWMTSNTSIDNEGHTTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKG
CCCEEEEECCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCC
AFADARVGYNYSDNGSQQQLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVAN
CCCCCEECCCCCCCCCHHHEEEEECCCEEEECCCCEECCCCCCCEEEEECCCCCCCEEEC
STGLKTDWRGYTVVPYATSYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAH
CCCCCCCCCCEEEEEEECCCCCCEEEEEHHHHHCCCCCCCEEEEEEECCCEEEEEECCCC
AGARVLMKTSKQGMPLRFGAMATLDGAQTISGIIDDDGSLYMSGLPAKGTITVRWGDAPD
CCEEEEEECCCCCCCEEECCEEECCCHHHHHHEECCCCCEEEECCCCCCEEEEEECCCCC
QICHISYELTEQQINAAITRMDSVCE
CEEEEEHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]